Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5255 and Pf1N1B4_5256 are separated by 149 nucleotides Pf1N1B4_5256 and Pf1N1B4_5257 are separated by 546 nucleotides
Pf1N1B4_5255 - hypothetical protein, at 14,928 to 15,152
_5255
Pf1N1B4_5256 - hypothetical protein, at 15,302 to 15,460
_5256
Pf1N1B4_5257 - hypothetical protein, at 16,007 to 16,306
_5257
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.964 kb on - strand at 14.101 kb on + strand at 14.148 kb on + strand at 14.148 kb on + strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.162 kb on + strand at 14.162 kb on + strand at 14.163 kb on - strand at 14.163 kb on - strand at 14.246 kb on + strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.401 kb on + strand at 14.401 kb on + strand at 14.401 kb on + strand at 14.402 kb on - strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.604 kb on + strand at 14.605 kb on - strand at 14.612 kb on - strand at 14.668 kb on + strand at 14.669 kb on - strand at 14.669 kb on - strand at 14.669 kb on - strand at 14.669 kb on - strand at 14.669 kb on - strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.670 kb on + strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.671 kb on - strand at 14.675 kb on - strand at 14.692 kb on + strand at 14.692 kb on + strand at 14.693 kb on - strand at 14.693 kb on - strand at 14.701 kb on - strand at 14.701 kb on - strand at 14.701 kb on - strand at 14.701 kb on - strand at 14.706 kb on + strand at 14.706 kb on + strand at 14.707 kb on - strand at 14.707 kb on - strand at 14.895 kb on - strand at 14.917 kb on - strand at 14.985 kb on - strand, within Pf1N1B4_5255 at 15.028 kb on + strand, within Pf1N1B4_5255 at 15.073 kb on + strand, within Pf1N1B4_5255 at 15.074 kb on - strand, within Pf1N1B4_5255 at 15.125 kb on + strand, within Pf1N1B4_5255 at 15.126 kb on - strand, within Pf1N1B4_5255 at 15.126 kb on - strand, within Pf1N1B4_5255 at 15.126 kb on - strand, within Pf1N1B4_5255 at 15.249 kb on - strand at 15.298 kb on - strand at 15.303 kb on + strand at 15.332 kb on + strand, within Pf1N1B4_5256 at 15.333 kb on - strand, within Pf1N1B4_5256 at 15.498 kb on + strand at 15.498 kb on + strand at 15.498 kb on + strand at 15.498 kb on + strand at 15.498 kb on + strand at 15.498 kb on + strand at 15.499 kb on - strand at 15.499 kb on - strand at 15.581 kb on - strand at 15.604 kb on + strand at 15.757 kb on + strand at 15.758 kb on - strand at 15.758 kb on - strand at 15.794 kb on + strand at 15.794 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.889 kb on + strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 15.890 kb on - strand at 16.037 kb on + strand, within Pf1N1B4_5257 at 16.037 kb on + strand, within Pf1N1B4_5257 at 16.037 kb on + strand at 16.037 kb on + strand, within Pf1N1B4_5257 at 16.038 kb on - strand, within Pf1N1B4_5257 at 16.038 kb on - strand, within Pf1N1B4_5257 at 16.038 kb on - strand, within Pf1N1B4_5257 at 16.038 kb on - strand, within Pf1N1B4_5257
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 13,964 - +1.0 14,101 + +0.6 14,148 + +0.0 14,148 + +0.0 14,149 - -1.6 14,149 - -0.7 14,149 - +2.3 14,149 - -0.4 14,149 - +0.4 14,162 + -1.0 14,162 + -0.9 14,163 - +0.6 14,163 - -0.7 14,246 + -2.0 14,364 - -0.7 14,364 - -1.6 14,364 - +0.0 14,364 - -0.3 14,401 + -1.5 14,401 + -2.0 14,401 + -2.0 14,402 - +1.3 14,539 + -0.4 14,539 + +0.0 14,604 + +1.0 14,605 - -0.6 14,612 - -0.6 14,668 + +1.0 14,669 - +0.6 14,669 - -0.6 14,669 - -0.2 14,669 - +0.4 14,669 - +0.8 14,670 + -1.6 14,670 + +1.3 14,670 + +0.6 14,670 + -0.3 14,670 + -0.6 14,670 + -0.4 14,670 + +1.0 14,670 + -2.0 14,670 + +0.4 14,670 + -0.2 14,671 - +1.6 14,671 - +1.0 14,671 - +1.0 14,671 - +0.9 14,671 - -0.7 14,671 - -1.8 14,671 - +0.0 14,671 - +0.4 14,671 - +0.2 14,671 - +0.6 14,671 - +0.0 14,671 - +0.0 14,671 - -1.2 14,671 - +0.0 14,671 - +0.0 14,671 - -1.2 14,671 - -1.0 14,671 - +0.4 14,671 - +1.3 14,671 - -2.0 14,671 - +0.0 14,671 - -1.3 14,675 - +0.0 14,692 + -2.3 14,692 + +0.2 14,693 - -2.3 14,693 - -0.3 14,701 - -0.2 14,701 - +0.6 14,701 - +0.6 14,701 - +1.0 14,706 + -1.3 14,706 + +0.4 14,707 - +0.0 14,707 - +0.4 14,895 - +1.6 14,917 - +1.2 14,985 - Pf1N1B4_5255 0.25 +0.4 15,028 + Pf1N1B4_5255 0.44 -1.3 15,073 + Pf1N1B4_5255 0.64 +1.8 15,074 - Pf1N1B4_5255 0.65 -1.2 15,125 + Pf1N1B4_5255 0.88 -1.4 15,126 - Pf1N1B4_5255 0.88 -2.0 15,126 - Pf1N1B4_5255 0.88 -1.2 15,126 - Pf1N1B4_5255 0.88 +0.0 15,249 - -0.6 15,298 - -0.4 15,303 + +3.0 15,332 + Pf1N1B4_5256 0.19 +0.2 15,333 - Pf1N1B4_5256 0.19 +1.0 15,498 + -1.6 15,498 + +0.4 15,498 + +0.6 15,498 + +0.8 15,498 + -0.2 15,498 + +0.8 15,499 - +1.0 15,499 - +0.0 15,581 - -1.2 15,604 + -1.6 15,757 + +0.0 15,758 - -0.3 15,758 - +1.6 15,794 + +0.1 15,794 + -0.3 15,889 + +0.6 15,889 + +0.8 15,889 + +1.3 15,889 + -0.7 15,889 + -1.3 15,889 + +0.3 15,889 + +1.0 15,889 + -2.0 15,889 + -1.0 15,889 + -1.4 15,890 - -0.2 15,890 - +0.0 15,890 - +0.0 15,890 - +0.6 15,890 - +0.5 15,890 - -0.1 15,890 - +0.0 15,890 - +0.0 15,890 - -1.0 16,037 + Pf1N1B4_5257 0.10 +0.2 16,037 + Pf1N1B4_5257 0.10 +0.0 16,037 + +0.0 16,037 + Pf1N1B4_5257 0.10 +0.4 16,038 - Pf1N1B4_5257 0.10 -2.4 16,038 - Pf1N1B4_5257 0.10 +0.3 16,038 - Pf1N1B4_5257 0.10 -0.4 16,038 - Pf1N1B4_5257 0.10 -0.1
Or see this region's nucleotide sequence