Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4561 and Pf1N1B4_4562 are separated by 278 nucleotides Pf1N1B4_4562 and Pf1N1B4_4563 are separated by 206 nucleotides
Pf1N1B4_4561 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 5,031,908 to 5,032,483
_4561
Pf1N1B4_4562 - Serine transporter, at 5,032,762 to 5,034,042
_4562
Pf1N1B4_4563 - Sulfate transporter, at 5,034,249 to 5,035,925
_4563
Position (kb) 5032
5033
5034
5035 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5031.791 kb on + strand at 5031.843 kb on - strand at 5032.074 kb on + strand, within Pf1N1B4_4561 at 5032.075 kb on - strand, within Pf1N1B4_4561 at 5032.075 kb on - strand, within Pf1N1B4_4561 at 5032.077 kb on + strand, within Pf1N1B4_4561 at 5032.335 kb on - strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.411 kb on - strand at 5032.411 kb on - strand, within Pf1N1B4_4561 at 5032.411 kb on - strand, within Pf1N1B4_4561 at 5032.414 kb on + strand, within Pf1N1B4_4561 at 5032.415 kb on - strand, within Pf1N1B4_4561 at 5032.439 kb on - strand at 5032.583 kb on - strand at 5032.635 kb on - strand at 5032.795 kb on + strand at 5032.796 kb on - strand at 5033.001 kb on - strand, within Pf1N1B4_4562 at 5033.087 kb on - strand at 5033.119 kb on + strand at 5033.208 kb on - strand, within Pf1N1B4_4562 at 5033.700 kb on + strand, within Pf1N1B4_4562 at 5033.700 kb on + strand, within Pf1N1B4_4562 at 5033.725 kb on + strand, within Pf1N1B4_4562 at 5034.025 kb on + strand at 5034.026 kb on - strand at 5034.048 kb on - strand at 5034.139 kb on + strand at 5034.293 kb on - strand at 5034.313 kb on + strand at 5034.314 kb on - strand at 5034.314 kb on - strand at 5034.857 kb on - strand at 5034.988 kb on + strand, within Pf1N1B4_4563 at 5035.029 kb on + strand, within Pf1N1B4_4563
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 5,031,791 + +0.1 5,031,843 - +0.2 5,032,074 + Pf1N1B4_4561 0.29 -0.4 5,032,075 - Pf1N1B4_4561 0.29 -1.6 5,032,075 - Pf1N1B4_4561 0.29 -2.0 5,032,077 + Pf1N1B4_4561 0.29 +0.6 5,032,335 - Pf1N1B4_4561 0.74 -0.0 5,032,410 + Pf1N1B4_4561 0.87 -0.0 5,032,410 + Pf1N1B4_4561 0.87 +0.1 5,032,410 + Pf1N1B4_4561 0.87 +0.6 5,032,410 + Pf1N1B4_4561 0.87 +0.5 5,032,410 + Pf1N1B4_4561 0.87 +0.2 5,032,411 - -0.8 5,032,411 - Pf1N1B4_4561 0.87 -2.4 5,032,411 - Pf1N1B4_4561 0.87 +0.6 5,032,414 + Pf1N1B4_4561 0.88 -2.4 5,032,415 - Pf1N1B4_4561 0.88 -0.8 5,032,439 - +1.2 5,032,583 - -1.4 5,032,635 - +1.2 5,032,795 + -1.1 5,032,796 - -0.4 5,033,001 - Pf1N1B4_4562 0.19 +0.6 5,033,087 - -0.4 5,033,119 + -0.4 5,033,208 - Pf1N1B4_4562 0.35 -1.4 5,033,700 + Pf1N1B4_4562 0.73 +0.2 5,033,700 + Pf1N1B4_4562 0.73 -0.7 5,033,725 + Pf1N1B4_4562 0.75 -2.0 5,034,025 + +0.4 5,034,026 - -1.0 5,034,048 - -3.0 5,034,139 + -1.0 5,034,293 - -0.4 5,034,313 + +0.6 5,034,314 - +0.6 5,034,314 - -0.4 5,034,857 - -2.0 5,034,988 + Pf1N1B4_4563 0.44 -2.0 5,035,029 + Pf1N1B4_4563 0.47 +1.2
Or see this region's nucleotide sequence