Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3901 and Pf1N1B4_3902 are separated by 515 nucleotides Pf1N1B4_3902 and Pf1N1B4_3903 are separated by 17 nucleotides Pf1N1B4_3903 and Pf1N1B4_3904 are separated by 54 nucleotides
Pf1N1B4_3901 - FIG00953628: hypothetical protein, at 4,332,011 to 4,332,448
_3901
Pf1N1B4_3902 - hypothetical protein, at 4,332,964 to 4,333,080
_3902
Pf1N1B4_3903 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,333,098 to 4,335,245
_3903
Pf1N1B4_3904 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,335,300 to 4,336,451
_3904
Position (kb)
4333
4334
4335
4336 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4332.344 kb on + strand, within Pf1N1B4_3901 at 4332.344 kb on + strand, within Pf1N1B4_3901 at 4332.461 kb on - strand at 4332.507 kb on + strand at 4332.612 kb on + strand at 4332.613 kb on - strand at 4332.680 kb on + strand at 4332.734 kb on + strand at 4332.777 kb on + strand at 4332.781 kb on + strand at 4332.781 kb on + strand at 4332.782 kb on - strand at 4332.782 kb on - strand at 4332.782 kb on - strand at 4332.790 kb on + strand at 4332.790 kb on + strand at 4332.790 kb on + strand at 4332.949 kb on + strand at 4332.949 kb on + strand at 4332.949 kb on + strand at 4332.949 kb on + strand at 4332.952 kb on + strand at 4332.952 kb on + strand at 4332.965 kb on + strand at 4335.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 4,332,344 + Pf1N1B4_3901 0.76 -0.3 4,332,344 + Pf1N1B4_3901 0.76 +1.3 4,332,461 - -1.7 4,332,507 + +0.7 4,332,612 + -0.3 4,332,613 - +1.0 4,332,680 + +0.7 4,332,734 + +1.3 4,332,777 + -0.6 4,332,781 + +0.3 4,332,781 + -1.8 4,332,782 - +0.7 4,332,782 - +0.3 4,332,782 - +0.0 4,332,790 + -2.3 4,332,790 + -0.3 4,332,790 + +1.7 4,332,949 + +0.5 4,332,949 + -0.5 4,332,949 + -0.3 4,332,949 + +2.7 4,332,952 + -0.3 4,332,952 + -0.3 4,332,965 + -1.8 4,335,256 + -0.3
Or see this region's nucleotide sequence