Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3903

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3901 and Pf1N1B4_3902 are separated by 515 nucleotidesPf1N1B4_3902 and Pf1N1B4_3903 are separated by 17 nucleotidesPf1N1B4_3903 and Pf1N1B4_3904 are separated by 54 nucleotides Pf1N1B4_3901 - FIG00953628: hypothetical protein, at 4,332,011 to 4,332,448 _3901 Pf1N1B4_3902 - hypothetical protein, at 4,332,964 to 4,333,080 _3902 Pf1N1B4_3903 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,333,098 to 4,335,245 _3903 Pf1N1B4_3904 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,335,300 to 4,336,451 _3904 Position (kb) 4333 4334 4335 4336Strain fitness (log2 ratio) -2 -1 0 1 2at 4332.344 kb on + strand, within Pf1N1B4_3901at 4332.344 kb on + strand, within Pf1N1B4_3901at 4332.461 kb on - strandat 4332.507 kb on + strandat 4332.612 kb on + strandat 4332.613 kb on - strandat 4332.680 kb on + strandat 4332.734 kb on + strandat 4332.777 kb on + strandat 4332.781 kb on + strandat 4332.781 kb on + strandat 4332.782 kb on - strandat 4332.782 kb on - strandat 4332.782 kb on - strandat 4332.790 kb on + strandat 4332.790 kb on + strandat 4332.790 kb on + strandat 4332.949 kb on + strandat 4332.949 kb on + strandat 4332.949 kb on + strandat 4332.949 kb on + strandat 4332.952 kb on + strandat 4332.952 kb on + strandat 4332.965 kb on + strandat 4335.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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4,332,344 + Pf1N1B4_3901 0.76 -0.3
4,332,344 + Pf1N1B4_3901 0.76 +1.3
4,332,461 - -1.7
4,332,507 + +0.7
4,332,612 + -0.3
4,332,613 - +1.0
4,332,680 + +0.7
4,332,734 + +1.3
4,332,777 + -0.6
4,332,781 + +0.3
4,332,781 + -1.8
4,332,782 - +0.7
4,332,782 - +0.3
4,332,782 - +0.0
4,332,790 + -2.3
4,332,790 + -0.3
4,332,790 + +1.7
4,332,949 + +0.5
4,332,949 + -0.5
4,332,949 + -0.3
4,332,949 + +2.7
4,332,952 + -0.3
4,332,952 + -0.3
4,332,965 + -1.8
4,335,256 + -0.3

Or see this region's nucleotide sequence