Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_350 and Pf1N1B4_351 overlap by 1 nucleotides Pf1N1B4_351 and Pf1N1B4_352 are separated by 1 nucleotides Pf1N1B4_352 and Pf1N1B4_353 are separated by 223 nucleotides
Pf1N1B4_350 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 415,241 to 416,335
_350
Pf1N1B4_351 - Phosphoserine aminotransferase (EC 2.6.1.52), at 416,335 to 417,213
_351
Pf1N1B4_352 - Phosphoserine aminotransferase (EC 2.6.1.52), at 417,215 to 417,427
_352
Pf1N1B4_353 - DNA gyrase subunit A (EC 5.99.1.3), at 417,651 to 420,320
_353
Position (kb) 416
417
418 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 415.365 kb on + strand, within Pf1N1B4_350 at 415.365 kb on + strand, within Pf1N1B4_350 at 415.365 kb on + strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.366 kb on - strand, within Pf1N1B4_350 at 415.376 kb on - strand, within Pf1N1B4_350 at 415.376 kb on - strand, within Pf1N1B4_350 at 415.376 kb on - strand, within Pf1N1B4_350 at 415.755 kb on + strand, within Pf1N1B4_350 at 415.756 kb on - strand, within Pf1N1B4_350 at 415.756 kb on - strand at 415.756 kb on - strand, within Pf1N1B4_350 at 415.756 kb on - strand, within Pf1N1B4_350 at 415.756 kb on - strand, within Pf1N1B4_350 at 415.756 kb on - strand, within Pf1N1B4_350 at 415.756 kb on - strand, within Pf1N1B4_350 at 416.043 kb on + strand, within Pf1N1B4_350 at 416.226 kb on - strand at 416.226 kb on - strand at 417.452 kb on + strand at 417.453 kb on - strand at 417.453 kb on - strand at 417.453 kb on - strand at 417.453 kb on - strand at 417.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 415,365 + Pf1N1B4_350 0.11 -3.9 415,365 + Pf1N1B4_350 0.11 -1.5 415,365 + Pf1N1B4_350 0.11 -0.9 415,366 - Pf1N1B4_350 0.11 -3.9 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 -1.2 415,366 - Pf1N1B4_350 0.11 -3.4 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 -1.2 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 -1.5 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 -2.8 415,366 - Pf1N1B4_350 0.11 -2.5 415,366 - Pf1N1B4_350 0.11 -2.8 415,366 - Pf1N1B4_350 0.11 -1.2 415,366 - Pf1N1B4_350 0.11 -1.8 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 -1.2 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 -2.2 415,366 - Pf1N1B4_350 0.11 +0.4 415,376 - Pf1N1B4_350 0.12 -1.5 415,376 - Pf1N1B4_350 0.12 -1.8 415,376 - Pf1N1B4_350 0.12 -2.5 415,755 + Pf1N1B4_350 0.47 -3.8 415,756 - Pf1N1B4_350 0.47 -2.8 415,756 - -0.2 415,756 - Pf1N1B4_350 0.47 -1.2 415,756 - Pf1N1B4_350 0.47 -0.2 415,756 - Pf1N1B4_350 0.47 -0.2 415,756 - Pf1N1B4_350 0.47 -0.2 415,756 - Pf1N1B4_350 0.47 -3.4 416,043 + Pf1N1B4_350 0.73 -3.9 416,226 - -2.2 416,226 - -1.8 417,452 + -1.2 417,453 - -0.2 417,453 - +0.2 417,453 - +0.1 417,453 - -0.2 417,653 - +0.1
Or see this region's nucleotide sequence