Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3308

Experiment: Carnitine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (N)
3,695,906	+				-0.1
3,695,906	+				-0.7
3,695,907	-				+0.9
3,695,907	-				-1.4
3,695,947	+				-0.1
3,695,947	+				-0.5
3,695,948	-				-0.1
3,695,950	+				-0.3
3,695,950	+				-1.1
3,695,950	+				+0.3
3,695,950	+				+0.9
3,695,950	+				+0.4
3,695,950	+				-1.7
3,695,951	-				-1.3
3,695,951	-				-1.7
3,695,951	-				-0.7
3,695,951	-				+0.9
3,695,951	-				+0.9
3,695,951	-				+1.9
3,695,951	-				-0.4
3,695,951	-				-1.7
3,695,951	-				+0.9
3,695,953	+				+0.2
3,695,953	+				+0.6
3,695,953	+				-1.1
3,695,953	+				+1.4
3,695,953	+				+0.9
3,695,953	+				+0.9
3,695,954	-				-0.1
3,695,970	+				+1.9
3,695,970	+				-1.5
3,695,970	+				+0.3
3,695,970	+				+0.3
3,695,970	+				-0.4
3,695,970	+				-0.1
3,695,971	-				+2.5
3,695,971	-				-0.5
3,695,974	+				-0.1
3,695,975	-				+1.2
3,695,986	+				-0.1
3,695,986	+				+0.4
3,695,987	-				+0.9
3,695,987	-				-0.1
3,695,989	+				-1.3
3,695,989	+				+0.3
3,695,989	+				-0.3
3,695,989	+				-0.1
3,695,989	+				+0.9
3,695,989	+				+1.1
3,695,990	-				+0.2
3,695,990	-				-1.1
3,695,990	-				-1.1
3,695,990	-				+1.7
3,695,990	-				-0.1
3,695,990	-				-1.7
3,695,990	-				-0.1
3,695,990	-				+0.9
3,695,990	-				+1.5
3,695,992	+				-0.1
3,695,992	+				+0.9
3,696,004	+				+0.9
3,696,004	+				+1.6
3,696,004	+				-1.1
3,696,004	+				-0.1
3,696,005	-				-0.8
3,696,005	-				+0.2
3,696,007	+				+0.2
3,696,007	+				-0.1
3,696,016	+				+2.2
3,696,016	+				-0.1
3,696,016	+				-1.1
3,696,016	+				-0.9
3,696,016	+				-1.1
3,696,017	-				+0.2
3,696,017	-				-0.1
3,696,017	-				-0.1
3,696,017	-				+0.7
3,696,019	+				+0.1
3,696,020	-				+0.9
3,696,020	-				-0.1
3,696,020	-				-1.1
3,696,020	-				+0.1
3,696,055	+				+1.9
3,696,058	+				+0.3
3,696,058	+				+1.5
3,696,058	+				+2.4
3,696,059	-				+0.9
3,696,059	-				-1.4
3,696,061	+				-0.7
3,696,061	+				-0.1
3,696,061	+				-0.6
3,696,061	+				-0.8
3,696,062	-				-0.1
3,696,062	-				-1.1
3,696,172	-				-1.3
3,696,202	-				-0.6
3,696,254	+				-0.1
3,696,254	+				-1.1
3,696,255	-				+0.4
3,696,377	-				-0.7
3,696,408	+				-0.5
3,696,429	+				+1.2
3,696,429	+				-0.7
3,696,429	+				+0.6
3,696,430	-				-0.3
3,696,430	-				-0.1
3,696,430	-				+1.0
3,696,430	-				+0.3
3,696,447	+				-0.6
3,696,447	+				+0.9
3,696,447	+				+0.3
3,696,447	+				-1.1
3,696,447	+				-0.1
3,696,447	+				+0.6
3,696,448	-				-0.5
3,696,448	-				+0.9
3,696,448	-				-0.1
3,696,465	+				+1.2
3,696,465	+				-0.1
3,696,466	-				-0.7
3,696,468	+				-0.9
3,696,468	+				+2.2
3,696,468	+				-0.5
3,696,468	+				-0.1
3,696,469	-				+0.6
3,696,486	+				-1.1
3,696,486	+				+1.5
3,696,486	+				-0.1
3,696,486	+				-1.1
3,696,486	+				-1.9
3,696,486	+				-0.4
3,696,487	-				-1.1
3,696,487	-				-0.1
3,696,487	-				-0.1
3,696,487	-				-1.5
3,696,487	-				-0.8
3,696,489	+				+0.3
3,696,489	+				-0.1
3,696,489	+				+0.2
3,696,489	+				-1.1
3,696,489	+				-0.1
3,696,490	-				-2.4
3,696,490	-				-1.9
3,696,490	-				-0.1
3,696,490	-				+2.5
3,696,490	-				-0.1
3,696,490	-				-1.7
3,696,507	+				-0.1
3,696,507	+				+0.1
3,696,508	-				-1.1
3,696,508	-				-1.9
3,696,508	-				-0.7
3,696,525	+				-0.5
3,696,525	+				+1.5
3,696,525	+				-0.1
3,696,525	+				+0.9
3,696,525	+				-0.3
3,696,526	-				+0.2
3,696,526	-				-0.1
3,696,528	+				+1.4
3,696,528	+				-0.6
3,696,529	-				+1.1
3,696,529	-				+1.5
3,696,546	+				-0.5
3,696,546	+				-1.1
3,696,549	+				-1.2
3,696,550	-				+0.3
3,696,550	-				-0.6
3,696,567	+				+0.3
3,696,568	-				-0.1
3,696,570	+				-1.1
3,696,570	+				-0.5
3,696,570	+				-2.4
3,696,570	+				-0.6
3,696,571	-				+0.3
3,696,571	-				-0.1
3,696,571	-				+0.0
3,696,571	-				+0.9
3,696,574	-				+1.1
3,696,606	+				-0.1
3,696,610	-				-0.1
3,696,610	-				+2.5
3,696,610	-				+0.5
3,696,835	-		Pf1N1B4_3307	0.87	+1.0
3,696,917	+				-1.1
3,696,917	+				-0.1
3,696,917	+				+1.4
3,696,917	+				-0.6
3,696,917	+				-1.3
3,696,988	+		Pf1N1B4_3308	0.10	+0.2
3,697,065	+		Pf1N1B4_3308	0.17	-1.3
3,697,065	+		Pf1N1B4_3308	0.17	-1.1
3,697,065	+		Pf1N1B4_3308	0.17	-0.5
3,697,066	-		Pf1N1B4_3308	0.17	-0.4
3,697,094	+		Pf1N1B4_3308	0.20	+0.6
3,697,095	-		Pf1N1B4_3308	0.20	-1.1
3,697,095	-		Pf1N1B4_3308	0.20	-0.7
3,697,641	+		Pf1N1B4_3308	0.69	+0.4
3,697,642	-		Pf1N1B4_3308	0.69	-0.4
3,697,642	-		Pf1N1B4_3308	0.69	-0.5
3,697,642	-		Pf1N1B4_3308	0.69	+0.9
3,697,674	+		Pf1N1B4_3308	0.72	-0.8
3,697,674	+		Pf1N1B4_3308	0.72	-0.4
3,697,779	-		Pf1N1B4_3308	0.81	-0.1
3,697,779	-		Pf1N1B4_3308	0.81	+1.2
3,697,779	-		Pf1N1B4_3308	0.81	-0.8
3,698,004	-				+1.9
3,698,016	+				+1.5
3,698,016	+				-0.8
3,698,017	-				+0.6
3,698,017	-				-0.3
3,698,017	-				-1.7
3,698,019	+				+2.2
3,698,020	-				+0.9
3,698,020	-				+0.2
3,698,032	+				+0.5
3,698,052	-				-0.1
3,698,115	+				-1.4
3,698,116	-				-0.7
3,698,116	-				-2.4
3,698,116	-				-0.1
3,698,116	-				+0.9
3,698,192	+		Pf1N1B4_3309	0.10	+0.2
3,698,192	+		Pf1N1B4_3309	0.10	-0.3
3,698,192	+		Pf1N1B4_3309	0.10	-1.1
3,698,192	+				-1.1
3,698,192	+		Pf1N1B4_3309	0.10	+2.2
3,698,193	-		Pf1N1B4_3309	0.11	-1.4
3,698,193	-		Pf1N1B4_3309	0.11	+0.2
3,698,193	-		Pf1N1B4_3309	0.11	+0.9
3,698,193	-		Pf1N1B4_3309	0.11	-0.1
3,698,193	-		Pf1N1B4_3309	0.11	+0.9
3,698,193	-		Pf1N1B4_3309	0.11	-0.9
3,698,193	-		Pf1N1B4_3309	0.11	+0.5
3,698,193	-		Pf1N1B4_3309	0.11	-0.7
3,698,249	+		Pf1N1B4_3309	0.19	+1.9
3,698,250	-		Pf1N1B4_3309	0.19	+0.2
3,698,250	-		Pf1N1B4_3309	0.19	-0.7
3,698,250	-		Pf1N1B4_3309	0.19	-0.3
3,698,250	-				+0.9
3,698,250	-		Pf1N1B4_3309	0.19	+0.2
3,698,415	-		Pf1N1B4_3309	0.43	+0.2
3,698,463	-		Pf1N1B4_3309	0.49	+0.5
3,698,561	+		Pf1N1B4_3309	0.64	-0.1
3,698,562	-		Pf1N1B4_3309	0.64	+0.5
3,698,562	-		Pf1N1B4_3309	0.64	-0.5
3,698,613	+		Pf1N1B4_3309	0.71	-0.5
3,698,613	+		Pf1N1B4_3309	0.71	-1.9
3,698,614	-		Pf1N1B4_3309	0.71	+0.5
3,698,985	+				-1.7
3,698,985	+				+0.9