Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2439 and Pf1N1B4_2440 are separated by 145 nucleotides Pf1N1B4_2440 and Pf1N1B4_2441 overlap by 1 nucleotides
Pf1N1B4_2439 - DgcA Dimethylglycine demethylase subunit A, at 2,761,951 to 2,764,011
_2439
Pf1N1B4_2440 - Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF, at 2,764,157 to 2,766,106
_2440
Pf1N1B4_2441 - Electron transfer flavoprotein, alpha subunit, at 2,766,106 to 2,767,326
_2441
Position (kb)
2764
2765
2766
2767 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2763.305 kb on + strand, within Pf1N1B4_2439 at 2763.386 kb on + strand, within Pf1N1B4_2439 at 2763.387 kb on - strand, within Pf1N1B4_2439 at 2763.387 kb on - strand, within Pf1N1B4_2439 at 2763.512 kb on - strand, within Pf1N1B4_2439 at 2763.640 kb on + strand, within Pf1N1B4_2439 at 2763.640 kb on + strand, within Pf1N1B4_2439 at 2763.641 kb on - strand, within Pf1N1B4_2439 at 2763.641 kb on - strand, within Pf1N1B4_2439 at 2763.656 kb on - strand, within Pf1N1B4_2439 at 2763.656 kb on - strand, within Pf1N1B4_2439 at 2763.745 kb on + strand, within Pf1N1B4_2439 at 2763.745 kb on + strand, within Pf1N1B4_2439 at 2763.745 kb on + strand, within Pf1N1B4_2439 at 2763.745 kb on + strand, within Pf1N1B4_2439 at 2763.746 kb on - strand, within Pf1N1B4_2439 at 2763.821 kb on - strand at 2763.979 kb on + strand at 2763.980 kb on - strand at 2763.980 kb on - strand at 2764.009 kb on + strand at 2764.009 kb on + strand at 2764.010 kb on - strand at 2764.234 kb on + strand at 2764.235 kb on - strand at 2764.235 kb on - strand at 2764.235 kb on - strand at 2764.301 kb on + strand at 2764.340 kb on + strand at 2764.340 kb on + strand at 2764.340 kb on + strand at 2764.340 kb on + strand at 2764.340 kb on + strand at 2764.341 kb on - strand at 2764.341 kb on - strand at 2764.341 kb on - strand at 2764.489 kb on + strand, within Pf1N1B4_2440 at 2764.489 kb on + strand, within Pf1N1B4_2440 at 2764.489 kb on + strand, within Pf1N1B4_2440 at 2764.490 kb on - strand, within Pf1N1B4_2440 at 2764.904 kb on - strand at 2765.552 kb on + strand, within Pf1N1B4_2440 at 2765.552 kb on + strand, within Pf1N1B4_2440 at 2765.553 kb on - strand, within Pf1N1B4_2440 at 2765.613 kb on - strand, within Pf1N1B4_2440 at 2765.634 kb on - strand, within Pf1N1B4_2440 at 2765.634 kb on - strand, within Pf1N1B4_2440 at 2765.657 kb on + strand, within Pf1N1B4_2440 at 2765.657 kb on + strand, within Pf1N1B4_2440 at 2765.657 kb on + strand, within Pf1N1B4_2440 at 2765.657 kb on + strand, within Pf1N1B4_2440 at 2765.658 kb on - strand, within Pf1N1B4_2440 at 2765.658 kb on - strand, within Pf1N1B4_2440 at 2765.658 kb on - strand, within Pf1N1B4_2440 at 2765.658 kb on - strand, within Pf1N1B4_2440 at 2765.658 kb on - strand, within Pf1N1B4_2440 at 2765.658 kb on - strand, within Pf1N1B4_2440 at 2765.723 kb on + strand, within Pf1N1B4_2440 at 2765.723 kb on + strand, within Pf1N1B4_2440 at 2765.723 kb on + strand, within Pf1N1B4_2440 at 2765.723 kb on + strand, within Pf1N1B4_2440 at 2765.739 kb on - strand, within Pf1N1B4_2440 at 2765.739 kb on - strand, within Pf1N1B4_2440 at 2765.762 kb on + strand, within Pf1N1B4_2440 at 2765.781 kb on + strand, within Pf1N1B4_2440 at 2765.782 kb on - strand, within Pf1N1B4_2440 at 2766.253 kb on - strand, within Pf1N1B4_2441 at 2766.373 kb on + strand, within Pf1N1B4_2441 at 2766.373 kb on + strand, within Pf1N1B4_2441 at 2766.373 kb on + strand, within Pf1N1B4_2441 at 2766.374 kb on - strand, within Pf1N1B4_2441 at 2766.374 kb on - strand, within Pf1N1B4_2441 at 2766.374 kb on - strand, within Pf1N1B4_2441 at 2766.483 kb on - strand, within Pf1N1B4_2441 at 2766.483 kb on - strand at 2766.568 kb on + strand, within Pf1N1B4_2441
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 2,763,305 + Pf1N1B4_2439 0.66 +0.3 2,763,386 + Pf1N1B4_2439 0.70 -2.7 2,763,387 - Pf1N1B4_2439 0.70 -2.5 2,763,387 - Pf1N1B4_2439 0.70 +0.3 2,763,512 - Pf1N1B4_2439 0.76 +0.3 2,763,640 + Pf1N1B4_2439 0.82 -1.3 2,763,640 + Pf1N1B4_2439 0.82 +0.3 2,763,641 - Pf1N1B4_2439 0.82 -1.3 2,763,641 - Pf1N1B4_2439 0.82 -0.7 2,763,656 - Pf1N1B4_2439 0.83 -1.0 2,763,656 - Pf1N1B4_2439 0.83 +0.3 2,763,745 + Pf1N1B4_2439 0.87 -1.3 2,763,745 + Pf1N1B4_2439 0.87 -2.5 2,763,745 + Pf1N1B4_2439 0.87 -2.7 2,763,745 + Pf1N1B4_2439 0.87 -2.1 2,763,746 - Pf1N1B4_2439 0.87 +0.3 2,763,821 - +0.3 2,763,979 + -1.7 2,763,980 - -1.7 2,763,980 - -0.7 2,764,009 + -2.1 2,764,009 + -0.3 2,764,010 - -2.0 2,764,234 + +0.8 2,764,235 - -4.4 2,764,235 - -0.7 2,764,235 - -1.3 2,764,301 + -2.7 2,764,340 + -5.2 2,764,340 + -1.3 2,764,340 + -0.7 2,764,340 + -1.3 2,764,340 + -2.1 2,764,341 - -2.5 2,764,341 - -0.2 2,764,341 - -1.3 2,764,489 + Pf1N1B4_2440 0.17 -1.3 2,764,489 + Pf1N1B4_2440 0.17 +0.3 2,764,489 + Pf1N1B4_2440 0.17 -0.7 2,764,490 - Pf1N1B4_2440 0.17 -1.7 2,764,904 - -0.7 2,765,552 + Pf1N1B4_2440 0.72 -1.3 2,765,552 + Pf1N1B4_2440 0.72 -1.9 2,765,553 - Pf1N1B4_2440 0.72 -0.7 2,765,613 - Pf1N1B4_2440 0.75 +0.3 2,765,634 - Pf1N1B4_2440 0.76 -2.3 2,765,634 - Pf1N1B4_2440 0.76 -1.7 2,765,657 + Pf1N1B4_2440 0.77 -2.3 2,765,657 + Pf1N1B4_2440 0.77 +0.3 2,765,657 + Pf1N1B4_2440 0.77 -1.7 2,765,657 + Pf1N1B4_2440 0.77 -0.7 2,765,658 - Pf1N1B4_2440 0.77 -2.5 2,765,658 - Pf1N1B4_2440 0.77 -3.8 2,765,658 - Pf1N1B4_2440 0.77 -2.5 2,765,658 - Pf1N1B4_2440 0.77 -0.7 2,765,658 - Pf1N1B4_2440 0.77 -1.0 2,765,658 - Pf1N1B4_2440 0.77 -1.3 2,765,723 + Pf1N1B4_2440 0.80 -1.3 2,765,723 + Pf1N1B4_2440 0.80 -5.4 2,765,723 + Pf1N1B4_2440 0.80 -1.7 2,765,723 + Pf1N1B4_2440 0.80 -2.5 2,765,739 - Pf1N1B4_2440 0.81 -1.7 2,765,739 - Pf1N1B4_2440 0.81 -2.3 2,765,762 + Pf1N1B4_2440 0.82 -1.5 2,765,781 + Pf1N1B4_2440 0.83 -2.3 2,765,782 - Pf1N1B4_2440 0.83 -2.1 2,766,253 - Pf1N1B4_2441 0.12 +0.8 2,766,373 + Pf1N1B4_2441 0.22 -1.7 2,766,373 + Pf1N1B4_2441 0.22 -2.1 2,766,373 + Pf1N1B4_2441 0.22 -2.1 2,766,374 - Pf1N1B4_2441 0.22 -1.5 2,766,374 - Pf1N1B4_2441 0.22 -1.3 2,766,374 - Pf1N1B4_2441 0.22 -1.7 2,766,483 - Pf1N1B4_2441 0.31 -1.1 2,766,483 - +0.8 2,766,568 + Pf1N1B4_2441 0.38 -2.9
Or see this region's nucleotide sequence