Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2440

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2439 and Pf1N1B4_2440 are separated by 145 nucleotidesPf1N1B4_2440 and Pf1N1B4_2441 overlap by 1 nucleotides Pf1N1B4_2439 - DgcA Dimethylglycine demethylase subunit A, at 2,761,951 to 2,764,011 _2439 Pf1N1B4_2440 - Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF, at 2,764,157 to 2,766,106 _2440 Pf1N1B4_2441 - Electron transfer flavoprotein, alpha subunit, at 2,766,106 to 2,767,326 _2441 Position (kb) 2764 2765 2766 2767Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2763.305 kb on + strand, within Pf1N1B4_2439at 2763.386 kb on + strand, within Pf1N1B4_2439at 2763.387 kb on - strand, within Pf1N1B4_2439at 2763.387 kb on - strand, within Pf1N1B4_2439at 2763.512 kb on - strand, within Pf1N1B4_2439at 2763.640 kb on + strand, within Pf1N1B4_2439at 2763.640 kb on + strand, within Pf1N1B4_2439at 2763.641 kb on - strand, within Pf1N1B4_2439at 2763.641 kb on - strand, within Pf1N1B4_2439at 2763.656 kb on - strand, within Pf1N1B4_2439at 2763.656 kb on - strand, within Pf1N1B4_2439at 2763.745 kb on + strand, within Pf1N1B4_2439at 2763.745 kb on + strand, within Pf1N1B4_2439at 2763.745 kb on + strand, within Pf1N1B4_2439at 2763.745 kb on + strand, within Pf1N1B4_2439at 2763.746 kb on - strand, within Pf1N1B4_2439at 2763.821 kb on - strandat 2763.979 kb on + strandat 2763.980 kb on - strandat 2763.980 kb on - strandat 2764.009 kb on + strandat 2764.009 kb on + strandat 2764.010 kb on - strandat 2764.234 kb on + strandat 2764.235 kb on - strandat 2764.235 kb on - strandat 2764.235 kb on - strandat 2764.301 kb on + strandat 2764.340 kb on + strandat 2764.340 kb on + strandat 2764.340 kb on + strandat 2764.340 kb on + strandat 2764.340 kb on + strandat 2764.341 kb on - strandat 2764.341 kb on - strandat 2764.341 kb on - strandat 2764.489 kb on + strand, within Pf1N1B4_2440at 2764.489 kb on + strand, within Pf1N1B4_2440at 2764.489 kb on + strand, within Pf1N1B4_2440at 2764.490 kb on - strand, within Pf1N1B4_2440at 2764.904 kb on - strandat 2765.552 kb on + strand, within Pf1N1B4_2440at 2765.552 kb on + strand, within Pf1N1B4_2440at 2765.553 kb on - strand, within Pf1N1B4_2440at 2765.613 kb on - strand, within Pf1N1B4_2440at 2765.634 kb on - strand, within Pf1N1B4_2440at 2765.634 kb on - strand, within Pf1N1B4_2440at 2765.657 kb on + strand, within Pf1N1B4_2440at 2765.657 kb on + strand, within Pf1N1B4_2440at 2765.657 kb on + strand, within Pf1N1B4_2440at 2765.657 kb on + strand, within Pf1N1B4_2440at 2765.658 kb on - strand, within Pf1N1B4_2440at 2765.658 kb on - strand, within Pf1N1B4_2440at 2765.658 kb on - strand, within Pf1N1B4_2440at 2765.658 kb on - strand, within Pf1N1B4_2440at 2765.658 kb on - strand, within Pf1N1B4_2440at 2765.658 kb on - strand, within Pf1N1B4_2440at 2765.723 kb on + strand, within Pf1N1B4_2440at 2765.723 kb on + strand, within Pf1N1B4_2440at 2765.723 kb on + strand, within Pf1N1B4_2440at 2765.723 kb on + strand, within Pf1N1B4_2440at 2765.739 kb on - strand, within Pf1N1B4_2440at 2765.739 kb on - strand, within Pf1N1B4_2440at 2765.762 kb on + strand, within Pf1N1B4_2440at 2765.781 kb on + strand, within Pf1N1B4_2440at 2765.782 kb on - strand, within Pf1N1B4_2440at 2766.253 kb on - strand, within Pf1N1B4_2441at 2766.373 kb on + strand, within Pf1N1B4_2441at 2766.373 kb on + strand, within Pf1N1B4_2441at 2766.373 kb on + strand, within Pf1N1B4_2441at 2766.374 kb on - strand, within Pf1N1B4_2441at 2766.374 kb on - strand, within Pf1N1B4_2441at 2766.374 kb on - strand, within Pf1N1B4_2441at 2766.483 kb on - strand, within Pf1N1B4_2441at 2766.483 kb on - strandat 2766.568 kb on + strand, within Pf1N1B4_2441

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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2,763,305 + Pf1N1B4_2439 0.66 +0.3
2,763,386 + Pf1N1B4_2439 0.70 -2.7
2,763,387 - Pf1N1B4_2439 0.70 -2.5
2,763,387 - Pf1N1B4_2439 0.70 +0.3
2,763,512 - Pf1N1B4_2439 0.76 +0.3
2,763,640 + Pf1N1B4_2439 0.82 -1.3
2,763,640 + Pf1N1B4_2439 0.82 +0.3
2,763,641 - Pf1N1B4_2439 0.82 -1.3
2,763,641 - Pf1N1B4_2439 0.82 -0.7
2,763,656 - Pf1N1B4_2439 0.83 -1.0
2,763,656 - Pf1N1B4_2439 0.83 +0.3
2,763,745 + Pf1N1B4_2439 0.87 -1.3
2,763,745 + Pf1N1B4_2439 0.87 -2.5
2,763,745 + Pf1N1B4_2439 0.87 -2.7
2,763,745 + Pf1N1B4_2439 0.87 -2.1
2,763,746 - Pf1N1B4_2439 0.87 +0.3
2,763,821 - +0.3
2,763,979 + -1.7
2,763,980 - -1.7
2,763,980 - -0.7
2,764,009 + -2.1
2,764,009 + -0.3
2,764,010 - -2.0
2,764,234 + +0.8
2,764,235 - -4.4
2,764,235 - -0.7
2,764,235 - -1.3
2,764,301 + -2.7
2,764,340 + -5.2
2,764,340 + -1.3
2,764,340 + -0.7
2,764,340 + -1.3
2,764,340 + -2.1
2,764,341 - -2.5
2,764,341 - -0.2
2,764,341 - -1.3
2,764,489 + Pf1N1B4_2440 0.17 -1.3
2,764,489 + Pf1N1B4_2440 0.17 +0.3
2,764,489 + Pf1N1B4_2440 0.17 -0.7
2,764,490 - Pf1N1B4_2440 0.17 -1.7
2,764,904 - -0.7
2,765,552 + Pf1N1B4_2440 0.72 -1.3
2,765,552 + Pf1N1B4_2440 0.72 -1.9
2,765,553 - Pf1N1B4_2440 0.72 -0.7
2,765,613 - Pf1N1B4_2440 0.75 +0.3
2,765,634 - Pf1N1B4_2440 0.76 -2.3
2,765,634 - Pf1N1B4_2440 0.76 -1.7
2,765,657 + Pf1N1B4_2440 0.77 -2.3
2,765,657 + Pf1N1B4_2440 0.77 +0.3
2,765,657 + Pf1N1B4_2440 0.77 -1.7
2,765,657 + Pf1N1B4_2440 0.77 -0.7
2,765,658 - Pf1N1B4_2440 0.77 -2.5
2,765,658 - Pf1N1B4_2440 0.77 -3.8
2,765,658 - Pf1N1B4_2440 0.77 -2.5
2,765,658 - Pf1N1B4_2440 0.77 -0.7
2,765,658 - Pf1N1B4_2440 0.77 -1.0
2,765,658 - Pf1N1B4_2440 0.77 -1.3
2,765,723 + Pf1N1B4_2440 0.80 -1.3
2,765,723 + Pf1N1B4_2440 0.80 -5.4
2,765,723 + Pf1N1B4_2440 0.80 -1.7
2,765,723 + Pf1N1B4_2440 0.80 -2.5
2,765,739 - Pf1N1B4_2440 0.81 -1.7
2,765,739 - Pf1N1B4_2440 0.81 -2.3
2,765,762 + Pf1N1B4_2440 0.82 -1.5
2,765,781 + Pf1N1B4_2440 0.83 -2.3
2,765,782 - Pf1N1B4_2440 0.83 -2.1
2,766,253 - Pf1N1B4_2441 0.12 +0.8
2,766,373 + Pf1N1B4_2441 0.22 -1.7
2,766,373 + Pf1N1B4_2441 0.22 -2.1
2,766,373 + Pf1N1B4_2441 0.22 -2.1
2,766,374 - Pf1N1B4_2441 0.22 -1.5
2,766,374 - Pf1N1B4_2441 0.22 -1.3
2,766,374 - Pf1N1B4_2441 0.22 -1.7
2,766,483 - Pf1N1B4_2441 0.31 -1.1
2,766,483 - +0.8
2,766,568 + Pf1N1B4_2441 0.38 -2.9

Or see this region's nucleotide sequence