Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_201 and Pf1N1B4_202 overlap by 1 nucleotides Pf1N1B4_202 and Pf1N1B4_203 are separated by 0 nucleotides Pf1N1B4_203 and Pf1N1B4_204 are separated by 204 nucleotides Pf1N1B4_204 and Pf1N1B4_205 are separated by 81 nucleotides
Pf1N1B4_201 - ABC transporter in pyoverdin gene cluster, ATP-binding component, at 248,166 to 249,017
_201
Pf1N1B4_202 - ABC transporter in pyoverdin gene cluster, permease component, at 249,017 to 249,916
_202
Pf1N1B4_203 - ABC transporter in pyoverdin gene cluster, periplasmic component, at 249,917 to 250,888
_203
Pf1N1B4_204 - FIG006220: Hypothetical MbtH-like protein, at 251,093 to 251,320
_204
Pf1N1B4_205 - Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76), at 251,402 to 252,814
_205
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2 at 249.023 kb on + strand at 249.024 kb on - strand at 249.251 kb on + strand at 249.251 kb on + strand, within Pf1N1B4_202 at 249.252 kb on - strand at 249.264 kb on - strand at 249.311 kb on + strand, within Pf1N1B4_202 at 249.311 kb on + strand at 249.311 kb on + strand at 249.311 kb on + strand, within Pf1N1B4_202 at 249.311 kb on + strand, within Pf1N1B4_202 at 249.312 kb on - strand, within Pf1N1B4_202 at 249.315 kb on + strand, within Pf1N1B4_202 at 249.315 kb on + strand, within Pf1N1B4_202 at 249.316 kb on - strand, within Pf1N1B4_202 at 249.316 kb on - strand, within Pf1N1B4_202 at 249.326 kb on - strand, within Pf1N1B4_202 at 249.533 kb on + strand, within Pf1N1B4_202 at 249.533 kb on + strand, within Pf1N1B4_202 at 249.534 kb on - strand, within Pf1N1B4_202 at 249.608 kb on + strand, within Pf1N1B4_202 at 250.103 kb on + strand, within Pf1N1B4_203 at 250.103 kb on + strand, within Pf1N1B4_203 at 250.104 kb on - strand, within Pf1N1B4_203 at 250.194 kb on - strand, within Pf1N1B4_203 at 250.226 kb on - strand, within Pf1N1B4_203 at 250.313 kb on - strand, within Pf1N1B4_203 at 250.500 kb on + strand, within Pf1N1B4_203 at 250.501 kb on - strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.738 kb on - strand, within Pf1N1B4_203 at 250.956 kb on + strand at 250.956 kb on + strand at 251.173 kb on - strand, within Pf1N1B4_204 at 251.238 kb on + strand, within Pf1N1B4_204 at 251.239 kb on - strand at 251.239 kb on - strand, within Pf1N1B4_204 at 251.310 kb on - strand at 251.339 kb on + strand at 251.339 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.863 kb on - strand, within Pf1N1B4_205
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 249,023 + -0.7 249,024 - +0.4 249,251 + -1.8 249,251 + Pf1N1B4_202 0.26 -2.7 249,252 - -1.2 249,264 - +0.8 249,311 + Pf1N1B4_202 0.33 -1.0 249,311 + +0.5 249,311 + +0.8 249,311 + Pf1N1B4_202 0.33 -1.7 249,311 + Pf1N1B4_202 0.33 -0.2 249,312 - Pf1N1B4_202 0.33 +2.1 249,315 + Pf1N1B4_202 0.33 -0.6 249,315 + Pf1N1B4_202 0.33 -0.2 249,316 - Pf1N1B4_202 0.33 -0.2 249,316 - Pf1N1B4_202 0.33 +0.4 249,326 - Pf1N1B4_202 0.34 -0.6 249,533 + Pf1N1B4_202 0.57 -0.6 249,533 + Pf1N1B4_202 0.57 +1.1 249,534 - Pf1N1B4_202 0.57 -1.5 249,608 + Pf1N1B4_202 0.66 +0.1 250,103 + Pf1N1B4_203 0.19 -2.0 250,103 + Pf1N1B4_203 0.19 -2.5 250,104 - Pf1N1B4_203 0.19 -1.8 250,194 - Pf1N1B4_203 0.28 -1.2 250,226 - Pf1N1B4_203 0.32 +0.8 250,313 - Pf1N1B4_203 0.41 +0.2 250,500 + Pf1N1B4_203 0.60 -1.2 250,501 - Pf1N1B4_203 0.60 -1.8 250,737 + Pf1N1B4_203 0.84 +0.4 250,737 + Pf1N1B4_203 0.84 -1.8 250,737 + Pf1N1B4_203 0.84 -1.2 250,738 - Pf1N1B4_203 0.84 +0.8 250,956 + -0.2 250,956 + -0.8 251,173 - Pf1N1B4_204 0.35 +0.0 251,238 + Pf1N1B4_204 0.64 -1.0 251,239 - +1.1 251,239 - Pf1N1B4_204 0.64 -0.7 251,310 - +0.0 251,339 + +0.2 251,339 + -0.5 251,373 + -0.6 251,373 + +0.4 251,373 + -0.1 251,373 + -0.2 251,373 + -1.8 251,374 - -0.4 251,374 - -0.4 251,374 - -0.2 251,374 - -0.2 251,374 - +1.8 251,374 - +0.8 251,374 - +0.4 251,374 - -1.2 251,863 - Pf1N1B4_205 0.33 -0.6
Or see this region's nucleotide sequence