Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1824 and Pf1N1B4_1825 are separated by 221 nucleotides Pf1N1B4_1825 and Pf1N1B4_1826 are separated by 28 nucleotides Pf1N1B4_1826 and Pf1N1B4_1827 overlap by 4 nucleotides Pf1N1B4_1827 and Pf1N1B4_1828 are separated by 281 nucleotides
Pf1N1B4_1824 - Outer membrane receptor proteins, mostly Fe transport, at 2,101,810 to 2,102,127
_1824
Pf1N1B4_1825 - Holliday junction resolvasome, helicase subunit, at 2,102,349 to 2,102,666
_1825
Pf1N1B4_1826 - FIG00953248: hypothetical protein, at 2,102,695 to 2,103,015
_1826
Pf1N1B4_1827 - FIG00953482: hypothetical protein, at 2,103,012 to 2,104,973
_1827
Pf1N1B4_1828 - Mobile element protein, at 2,105,255 to 2,106,046
_1828
Position (kb)
2103
2104
2105 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2102.125 kb on + strand at 2102.125 kb on + strand at 2102.125 kb on + strand at 2102.125 kb on + strand at 2102.126 kb on - strand at 2102.126 kb on - strand at 2102.126 kb on - strand at 2102.126 kb on - strand at 2102.126 kb on - strand at 2102.126 kb on - strand at 2102.155 kb on + strand at 2102.155 kb on + strand at 2102.267 kb on + strand at 2102.267 kb on + strand at 2102.267 kb on + strand at 2102.267 kb on + strand at 2102.268 kb on - strand at 2102.268 kb on - strand at 2102.268 kb on - strand at 2102.334 kb on + strand at 2102.334 kb on + strand at 2102.334 kb on + strand at 2102.334 kb on + strand at 2102.334 kb on + strand at 2102.334 kb on + strand at 2102.334 kb on + strand at 2102.335 kb on - strand at 2102.366 kb on + strand at 2102.367 kb on - strand at 2102.505 kb on - strand, within Pf1N1B4_1825 at 2102.664 kb on + strand at 2102.664 kb on + strand at 2102.664 kb on + strand at 2102.664 kb on + strand at 2102.665 kb on - strand at 2102.665 kb on - strand at 2102.668 kb on + strand at 2102.700 kb on + strand at 2102.779 kb on - strand, within Pf1N1B4_1826 at 2103.088 kb on + strand at 2103.089 kb on - strand at 2103.459 kb on - strand, within Pf1N1B4_1827 at 2103.571 kb on - strand, within Pf1N1B4_1827 at 2103.634 kb on - strand, within Pf1N1B4_1827 at 2103.679 kb on - strand, within Pf1N1B4_1827 at 2103.679 kb on - strand at 2103.679 kb on - strand at 2103.679 kb on - strand, within Pf1N1B4_1827 at 2103.679 kb on - strand, within Pf1N1B4_1827 at 2103.699 kb on + strand, within Pf1N1B4_1827 at 2103.724 kb on - strand, within Pf1N1B4_1827 at 2103.729 kb on + strand, within Pf1N1B4_1827 at 2103.733 kb on - strand, within Pf1N1B4_1827 at 2103.871 kb on + strand, within Pf1N1B4_1827 at 2103.872 kb on - strand, within Pf1N1B4_1827 at 2104.024 kb on + strand, within Pf1N1B4_1827 at 2104.024 kb on + strand, within Pf1N1B4_1827 at 2104.024 kb on + strand, within Pf1N1B4_1827 at 2104.025 kb on - strand, within Pf1N1B4_1827 at 2104.025 kb on - strand, within Pf1N1B4_1827 at 2104.056 kb on - strand, within Pf1N1B4_1827 at 2104.060 kb on - strand, within Pf1N1B4_1827 at 2104.107 kb on + strand, within Pf1N1B4_1827 at 2104.108 kb on - strand, within Pf1N1B4_1827 at 2104.108 kb on - strand, within Pf1N1B4_1827 at 2105.005 kb on - strand at 2105.005 kb on - strand at 2105.005 kb on - strand at 2105.005 kb on - strand at 2105.005 kb on - strand at 2105.005 kb on - strand at 2105.005 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand at 2105.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 2,102,125 + -0.2 2,102,125 + +0.2 2,102,125 + -0.1 2,102,125 + +0.6 2,102,126 - -1.0 2,102,126 - +0.1 2,102,126 - +0.8 2,102,126 - -0.2 2,102,126 - +1.9 2,102,126 - -0.6 2,102,155 + +0.4 2,102,155 + -2.6 2,102,267 + -1.6 2,102,267 + -0.6 2,102,267 + -3.1 2,102,267 + +0.4 2,102,268 - +0.8 2,102,268 - +0.4 2,102,268 - -2.0 2,102,334 + -0.4 2,102,334 + +1.8 2,102,334 + -1.2 2,102,334 + +0.2 2,102,334 + +0.4 2,102,334 + +0.6 2,102,334 + -0.6 2,102,335 - -0.6 2,102,366 + +0.2 2,102,367 - -1.6 2,102,505 - Pf1N1B4_1825 0.49 +0.0 2,102,664 + +1.4 2,102,664 + -0.4 2,102,664 + -1.8 2,102,664 + +0.8 2,102,665 - -1.0 2,102,665 - +1.1 2,102,668 + +0.6 2,102,700 + -2.0 2,102,779 - Pf1N1B4_1826 0.26 -2.0 2,103,088 + +1.1 2,103,089 - -1.5 2,103,459 - Pf1N1B4_1827 0.23 -1.0 2,103,571 - Pf1N1B4_1827 0.28 -0.5 2,103,634 - Pf1N1B4_1827 0.32 +0.4 2,103,679 - Pf1N1B4_1827 0.34 -0.6 2,103,679 - +0.4 2,103,679 - +0.4 2,103,679 - Pf1N1B4_1827 0.34 +0.2 2,103,679 - Pf1N1B4_1827 0.34 -0.6 2,103,699 + Pf1N1B4_1827 0.35 -0.6 2,103,724 - Pf1N1B4_1827 0.36 +0.4 2,103,729 + Pf1N1B4_1827 0.37 -0.2 2,103,733 - Pf1N1B4_1827 0.37 -0.6 2,103,871 + Pf1N1B4_1827 0.44 -0.6 2,103,872 - Pf1N1B4_1827 0.44 -1.0 2,104,024 + Pf1N1B4_1827 0.52 -0.6 2,104,024 + Pf1N1B4_1827 0.52 -1.6 2,104,024 + Pf1N1B4_1827 0.52 -0.4 2,104,025 - Pf1N1B4_1827 0.52 -1.6 2,104,025 - Pf1N1B4_1827 0.52 +0.4 2,104,056 - Pf1N1B4_1827 0.53 -1.2 2,104,060 - Pf1N1B4_1827 0.53 -1.2 2,104,107 + Pf1N1B4_1827 0.56 +1.9 2,104,108 - Pf1N1B4_1827 0.56 -2.0 2,104,108 - Pf1N1B4_1827 0.56 -1.2 2,105,005 - +0.9 2,105,005 - +1.9 2,105,005 - +0.4 2,105,005 - +0.4 2,105,005 - +1.6 2,105,005 - -0.5 2,105,005 - -0.1 2,105,011 - +0.9 2,105,011 - +0.4 2,105,011 - +0.8 2,105,011 - -2.5 2,105,011 - -1.2 2,105,011 - -0.1 2,105,011 - -0.1 2,105,011 - -0.6 2,105,011 - -0.4 2,105,011 - -0.9 2,105,011 - -1.6 2,105,011 - -0.6 2,105,011 - -0.6 2,105,011 - -0.1
Or see this region's nucleotide sequence