Experiment: Formate deepwell autotrophic conditions
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04670 and MMP_RS04675 are separated by 9 nucleotides MMP_RS04675 and MMP_RS04680 are separated by 29 nucleotides MMP_RS04680 and MMP_RS04685 are separated by 66 nucleotides MMP_RS04685 and MMP_RS04690 are separated by 11 nucleotides MMP_RS04690 and MMP_RS09010 are separated by 87 nucleotides MMP_RS09010 and MMP_RS04695 are separated by 35 nucleotides
MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586
_RS04670
MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249
_RS04675
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
MMP_RS04685: MMP_RS04685 - DUF126 domain-containing protein, at 897,383 to 897,775
_RS04685
MMP_RS04690: MMP_RS04690 - class III signal peptide-containing protein, at 897,787 to 898,014
_RS04690
MMP_RS09010: MMP_RS09010 - hypothetical protein, at 898,102 to 898,260
_RS09010
MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303
_RS04695
Position (kb) 896
897
898 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 895.417 kb on + strand, within MMP_RS04670 at 895.546 kb on + strand at 895.578 kb on + strand at 895.625 kb on - strand at 895.644 kb on + strand at 895.649 kb on + strand at 895.679 kb on + strand, within MMP_RS04675 at 895.685 kb on + strand, within MMP_RS04675 at 895.757 kb on - strand, within MMP_RS04675 at 895.761 kb on + strand, within MMP_RS04675 at 895.777 kb on - strand, within MMP_RS04675 at 895.817 kb on - strand, within MMP_RS04675 at 895.827 kb on - strand, within MMP_RS04675 at 895.869 kb on + strand, within MMP_RS04675 at 895.906 kb on - strand, within MMP_RS04675 at 895.907 kb on + strand, within MMP_RS04675 at 895.909 kb on - strand, within MMP_RS04675 at 895.995 kb on - strand, within MMP_RS04675 at 896.017 kb on + strand, within MMP_RS04675 at 896.062 kb on - strand, within MMP_RS04675 at 896.062 kb on - strand, within MMP_RS04675 at 896.212 kb on - strand at 896.229 kb on - strand at 896.231 kb on - strand at 896.234 kb on - strand at 896.234 kb on - strand at 896.234 kb on - strand at 896.248 kb on + strand at 896.288 kb on - strand at 896.288 kb on - strand at 896.320 kb on - strand at 896.324 kb on - strand at 896.324 kb on - strand at 896.340 kb on + strand at 896.414 kb on + strand at 896.504 kb on + strand at 896.575 kb on + strand at 897.237 kb on - strand at 897.265 kb on + strand at 897.270 kb on + strand at 897.271 kb on - strand at 897.271 kb on - strand at 897.272 kb on + strand at 897.316 kb on - strand at 897.360 kb on - strand at 897.364 kb on + strand at 897.426 kb on + strand, within MMP_RS04685 at 897.426 kb on + strand, within MMP_RS04685 at 897.429 kb on + strand, within MMP_RS04685 at 897.432 kb on + strand, within MMP_RS04685 at 897.455 kb on - strand, within MMP_RS04685 at 897.577 kb on + strand, within MMP_RS04685 at 897.631 kb on - strand, within MMP_RS04685 at 897.897 kb on - strand, within MMP_RS04690 at 897.908 kb on - strand, within MMP_RS04690 at 897.914 kb on - strand, within MMP_RS04690 at 897.953 kb on + strand, within MMP_RS04690 at 898.001 kb on - strand at 898.001 kb on - strand at 898.043 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.050 kb on + strand at 898.050 kb on + strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.054 kb on + strand at 898.069 kb on - strand at 898.070 kb on + strand at 898.075 kb on - strand at 898.075 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.080 kb on + strand at 898.080 kb on + strand at 898.082 kb on - strand at 898.098 kb on - strand at 898.099 kb on + strand at 898.099 kb on + strand at 898.129 kb on - strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.165 kb on + strand, within MMP_RS09010 at 898.237 kb on - strand, within MMP_RS09010
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell autotrophic conditions remove 895,417 + MMP_RS04670 0.74 -0.6 895,546 + -0.6 895,578 + +0.4 895,625 - -0.9 895,644 + -0.2 895,649 + -0.8 895,679 + MMP_RS04675 0.13 -0.7 895,685 + MMP_RS04675 0.14 -0.6 895,757 - MMP_RS04675 0.25 -0.2 895,761 + MMP_RS04675 0.25 -1.2 895,777 - MMP_RS04675 0.28 +0.3 895,817 - MMP_RS04675 0.34 -0.7 895,827 - MMP_RS04675 0.35 -1.9 895,869 + MMP_RS04675 0.42 -0.0 895,906 - MMP_RS04675 0.47 -2.3 895,907 + MMP_RS04675 0.48 -0.4 895,909 - MMP_RS04675 0.48 -0.3 895,995 - MMP_RS04675 0.61 -0.1 896,017 + MMP_RS04675 0.64 -0.4 896,062 - MMP_RS04675 0.71 -0.4 896,062 - MMP_RS04675 0.71 -0.1 896,212 - -0.7 896,229 - -0.2 896,231 - -0.4 896,234 - +0.8 896,234 - +1.0 896,234 - +0.1 896,248 + +0.7 896,288 - -0.1 896,288 - -1.1 896,320 - +0.6 896,324 - +0.6 896,324 - -0.0 896,340 + -0.2 896,414 + -1.0 896,504 + -0.9 896,575 + -2.4 897,237 - -2.6 897,265 + -1.4 897,270 + -3.3 897,271 - -3.3 897,271 - -3.5 897,272 + -4.1 897,316 - -2.3 897,360 - -2.5 897,364 + -3.4 897,426 + MMP_RS04685 0.11 -1.5 897,426 + MMP_RS04685 0.11 -1.0 897,429 + MMP_RS04685 0.12 -0.9 897,432 + MMP_RS04685 0.12 -4.3 897,455 - MMP_RS04685 0.18 -3.2 897,577 + MMP_RS04685 0.49 -2.0 897,631 - MMP_RS04685 0.63 -3.5 897,897 - MMP_RS04690 0.48 +0.5 897,908 - MMP_RS04690 0.53 -0.1 897,914 - MMP_RS04690 0.56 -0.6 897,953 + MMP_RS04690 0.73 -2.4 898,001 - -0.3 898,001 - +0.8 898,043 - -0.4 898,049 - +0.3 898,049 - -0.5 898,049 - +0.2 898,050 + -4.1 898,050 + -2.2 898,051 - +0.6 898,051 - -0.2 898,051 - +0.2 898,054 + -1.5 898,069 - -0.8 898,070 + -0.3 898,075 - +0.8 898,075 - -0.5 898,079 - +0.7 898,079 - -0.1 898,079 - +0.4 898,080 + -0.0 898,080 + +0.2 898,082 - -0.7 898,098 - +0.5 898,099 + +0.3 898,099 + +0.1 898,129 - MMP_RS09010 0.17 -0.1 898,130 + MMP_RS09010 0.18 -0.1 898,130 + MMP_RS09010 0.18 -0.1 898,130 + MMP_RS09010 0.18 +0.1 898,139 - MMP_RS09010 0.23 -0.5 898,139 - MMP_RS09010 0.23 -0.6 898,140 + MMP_RS09010 0.24 +0.7 898,140 + MMP_RS09010 0.24 -0.0 898,165 + MMP_RS09010 0.40 +0.4 898,237 - MMP_RS09010 0.85 +0.4
Or see this region's nucleotide sequence