Experiment: Formate deepwell autotrophic conditions
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01250 and MMP_RS01255 are separated by 33 nucleotides MMP_RS01255 and MMP_RS01260 are separated by 40 nucleotides MMP_RS01260 and MMP_RS01265 are separated by 81 nucleotides
MMP_RS01250: MMP_RS01250 - tRNA (guanine(26)-N(2))-dimethyltransferase, at 236,852 to 237,973
_RS01250
MMP_RS01255: MMP_RS01255 - amino acid ABC transporter ATP-binding protein, at 238,007 to 238,738
_RS01255
MMP_RS01260: MMP_RS01260 - HDIG domain-containing protein, at 238,779 to 239,465
_RS01260
MMP_RS01265: MMP_RS01265 - hypothetical protein, at 239,547 to 239,915
_RS01265
Position (kb) 238
239 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 237.222 kb on - strand, within MMP_RS01250 at 237.343 kb on + strand, within MMP_RS01250 at 237.572 kb on - strand, within MMP_RS01250 at 237.605 kb on + strand, within MMP_RS01250 at 237.872 kb on + strand at 237.877 kb on - strand at 237.983 kb on + strand at 237.989 kb on - strand at 237.993 kb on - strand at 237.994 kb on + strand at 237.994 kb on + strand at 238.009 kb on + strand at 238.066 kb on - strand at 238.067 kb on + strand at 238.205 kb on - strand, within MMP_RS01255 at 238.215 kb on + strand, within MMP_RS01255 at 238.262 kb on - strand, within MMP_RS01255 at 238.450 kb on - strand, within MMP_RS01255 at 238.646 kb on - strand, within MMP_RS01255 at 239.228 kb on + strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.397 kb on + strand at 239.454 kb on - strand at 239.454 kb on - strand at 239.482 kb on - strand at 239.482 kb on - strand at 239.483 kb on + strand at 239.485 kb on + strand at 239.486 kb on - strand at 239.499 kb on + strand at 239.512 kb on + strand at 239.544 kb on - strand at 239.544 kb on - strand at 239.546 kb on - strand at 239.546 kb on - strand at 239.546 kb on - strand at 239.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell autotrophic conditions remove 237,222 - MMP_RS01250 0.33 -0.9 237,343 + MMP_RS01250 0.44 -0.8 237,572 - MMP_RS01250 0.64 -0.3 237,605 + MMP_RS01250 0.67 -1.0 237,872 + -0.5 237,877 - -1.7 237,983 + -0.1 237,989 - +0.9 237,993 - -0.1 237,994 + +0.2 237,994 + -0.0 238,009 + +0.7 238,066 - +0.2 238,067 + +1.1 238,205 - MMP_RS01255 0.27 +0.3 238,215 + MMP_RS01255 0.28 -0.0 238,262 - MMP_RS01255 0.35 -0.1 238,450 - MMP_RS01255 0.61 -0.2 238,646 - MMP_RS01255 0.87 +0.8 239,228 + MMP_RS01260 0.65 -0.3 239,394 - MMP_RS01260 0.90 +0.1 239,394 - MMP_RS01260 0.90 +0.6 239,394 - MMP_RS01260 0.90 +1.4 239,397 + -0.1 239,454 - -0.7 239,454 - +0.2 239,482 - +0.1 239,482 - +0.1 239,483 + +0.3 239,485 + -0.3 239,486 - +0.6 239,499 + +0.9 239,512 + +0.6 239,544 - -4.8 239,544 - -4.3 239,546 - -2.6 239,546 - -4.6 239,546 - -3.2 239,547 + -4.7
Or see this region's nucleotide sequence