Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24290

Experiment: D-Glucose-6-Phosphate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24285 and BWI76_RS24290 are separated by 132 nucleotidesBWI76_RS24290 and BWI76_RS24295 are separated by 31 nucleotides BWI76_RS24285: BWI76_RS24285 - cystathionine beta-lyase, at 5,059,322 to 5,060,509 _RS24285 BWI76_RS24290: BWI76_RS24290 - membrane protein, at 5,060,642 to 5,061,301 _RS24290 BWI76_RS24295: BWI76_RS24295 - AraC family transcriptional regulator, at 5,061,333 to 5,062,232 _RS24295 Position (kb) 5060 5061 5062Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5059.658 kb on - strand, within BWI76_RS24285at 5059.746 kb on + strand, within BWI76_RS24285at 5059.750 kb on + strand, within BWI76_RS24285at 5059.900 kb on + strand, within BWI76_RS24285at 5060.087 kb on - strand, within BWI76_RS24285at 5060.098 kb on + strand, within BWI76_RS24285at 5060.102 kb on - strand, within BWI76_RS24285at 5060.119 kb on - strand, within BWI76_RS24285at 5060.286 kb on - strand, within BWI76_RS24285at 5060.592 kb on + strandat 5060.721 kb on + strand, within BWI76_RS24290at 5060.906 kb on - strand, within BWI76_RS24290at 5060.949 kb on - strand, within BWI76_RS24290at 5061.063 kb on + strand, within BWI76_RS24290at 5061.202 kb on + strand, within BWI76_RS24290at 5061.347 kb on - strandat 5061.432 kb on - strand, within BWI76_RS24295at 5061.572 kb on + strand, within BWI76_RS24295at 5061.662 kb on - strandat 5061.719 kb on + strand, within BWI76_RS24295at 5061.953 kb on + strand, within BWI76_RS24295at 5062.013 kb on + strand, within BWI76_RS24295at 5062.126 kb on - strand, within BWI76_RS24295at 5062.149 kb on - strandat 5062.252 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
remove
5,059,658 - BWI76_RS24285 0.28 -2.7
5,059,746 + BWI76_RS24285 0.36 -5.8
5,059,750 + BWI76_RS24285 0.36 -1.9
5,059,900 + BWI76_RS24285 0.49 -3.5
5,060,087 - BWI76_RS24285 0.64 -3.1
5,060,098 + BWI76_RS24285 0.65 -4.6
5,060,102 - BWI76_RS24285 0.66 -4.7
5,060,119 - BWI76_RS24285 0.67 -3.3
5,060,286 - BWI76_RS24285 0.81 -4.4
5,060,592 + -0.3
5,060,721 + BWI76_RS24290 0.12 -1.7
5,060,906 - BWI76_RS24290 0.40 -2.0
5,060,949 - BWI76_RS24290 0.47 -1.3
5,061,063 + BWI76_RS24290 0.64 -0.3
5,061,202 + BWI76_RS24290 0.85 +0.2
5,061,347 - +0.1
5,061,432 - BWI76_RS24295 0.11 +0.4
5,061,572 + BWI76_RS24295 0.27 -0.2
5,061,662 - +0.1
5,061,719 + BWI76_RS24295 0.43 -0.2
5,061,953 + BWI76_RS24295 0.69 -0.2
5,062,013 + BWI76_RS24295 0.76 -0.1
5,062,126 - BWI76_RS24295 0.88 -0.5
5,062,149 - +0.3
5,062,252 - -0.3

Or see this region's nucleotide sequence