Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16025

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16020 and BWI76_RS16025 overlap by 1 nucleotidesBWI76_RS16025 and BWI76_RS16030 are separated by 17 nucleotidesBWI76_RS16030 and BWI76_RS16035 overlap by 8 nucleotides BWI76_RS16020: BWI76_RS16020 - malonate decarboxylase subunit alpha, at 3,322,117 to 3,323,772 _RS16020 BWI76_RS16025: BWI76_RS16025 - triphosphoribosyl-dephospho-CoA synthase, at 3,323,772 to 3,324,614 _RS16025 BWI76_RS16030: BWI76_RS16030 - malonate decarboxylase acyl carrier protein, at 3,324,632 to 3,324,931 _RS16030 BWI76_RS16035: BWI76_RS16035 - biotin-independent malonate decarboxylase subunit beta, at 3,324,924 to 3,325,757 _RS16035 Position (kb) 3323 3324 3325Strain fitness (log2 ratio) -2 -1 0 1at 3322.910 kb on + strand, within BWI76_RS16020at 3322.965 kb on - strand, within BWI76_RS16020at 3323.076 kb on - strand, within BWI76_RS16020at 3323.385 kb on - strand, within BWI76_RS16020at 3323.525 kb on - strand, within BWI76_RS16020at 3323.737 kb on + strandat 3324.104 kb on - strand, within BWI76_RS16025at 3324.304 kb on - strand, within BWI76_RS16025at 3324.729 kb on - strand, within BWI76_RS16030at 3324.776 kb on - strand, within BWI76_RS16030at 3324.906 kb on + strandat 3324.991 kb on - strandat 3325.238 kb on + strand, within BWI76_RS16035at 3325.287 kb on - strand, within BWI76_RS16035at 3325.339 kb on + strand, within BWI76_RS16035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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3,322,910 + BWI76_RS16020 0.48 +0.7
3,322,965 - BWI76_RS16020 0.51 -1.4
3,323,076 - BWI76_RS16020 0.58 -0.1
3,323,385 - BWI76_RS16020 0.77 +0.5
3,323,525 - BWI76_RS16020 0.85 -0.2
3,323,737 + +1.6
3,324,104 - BWI76_RS16025 0.39 -2.0
3,324,304 - BWI76_RS16025 0.63 -0.8
3,324,729 - BWI76_RS16030 0.32 +1.3
3,324,776 - BWI76_RS16030 0.48 +0.3
3,324,906 + +0.4
3,324,991 - +0.1
3,325,238 + BWI76_RS16035 0.38 -0.5
3,325,287 - BWI76_RS16035 0.44 +0.7
3,325,339 + BWI76_RS16035 0.50 -0.7

Or see this region's nucleotide sequence