Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14075

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14065 and BWI76_RS14070 are separated by 5 nucleotidesBWI76_RS14070 and BWI76_RS14075 are separated by 17 nucleotidesBWI76_RS14075 and BWI76_RS14080 are separated by 11 nucleotides BWI76_RS14065: BWI76_RS14065 - hypothetical protein, at 2,939,961 to 2,940,386 _RS14065 BWI76_RS14070: BWI76_RS14070 - ECF subfamily RNA polymerase sigma-24 subunit, at 2,940,392 to 2,940,952 _RS14070 BWI76_RS14075: BWI76_RS14075 - TetR family transcriptional regulator, at 2,940,970 to 2,941,605 _RS14075 BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724 _RS14080 Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -1 0 1at 2940.146 kb on - strand, within BWI76_RS14065at 2940.253 kb on + strand, within BWI76_RS14065at 2940.261 kb on - strand, within BWI76_RS14065at 2940.760 kb on - strand, within BWI76_RS14070at 2941.102 kb on + strand, within BWI76_RS14075at 2941.246 kb on - strand, within BWI76_RS14075at 2941.809 kb on + strandat 2942.107 kb on + strand, within BWI76_RS14080at 2942.131 kb on + strand, within BWI76_RS14080at 2942.308 kb on + strand, within BWI76_RS14080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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2,940,146 - BWI76_RS14065 0.43 -1.2
2,940,253 + BWI76_RS14065 0.69 +1.2
2,940,261 - BWI76_RS14065 0.70 -0.7
2,940,760 - BWI76_RS14070 0.66 -0.1
2,941,102 + BWI76_RS14075 0.21 -1.1
2,941,246 - BWI76_RS14075 0.43 -0.6
2,941,809 + +0.1
2,942,107 + BWI76_RS14080 0.16 +0.2
2,942,131 + BWI76_RS14080 0.17 -0.1
2,942,308 + BWI76_RS14080 0.22 -0.1

Or see this region's nucleotide sequence