Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13805

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13800 and BWI76_RS13805 are separated by 255 nucleotidesBWI76_RS13805 and BWI76_RS13810 are separated by 200 nucleotides BWI76_RS13800: BWI76_RS13800 - zinc-dependent alcohol dehydrogenase, at 2,878,494 to 2,879,504 _RS13800 BWI76_RS13805: BWI76_RS13805 - inorganic diphosphatase, at 2,879,760 to 2,880,359 _RS13805 BWI76_RS13810: BWI76_RS13810 - MarR family transcriptional regulator, at 2,880,560 to 2,881,516 _RS13810 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -1 0 1at 2878.925 kb on + strand, within BWI76_RS13800at 2878.968 kb on + strand, within BWI76_RS13800at 2879.023 kb on + strand, within BWI76_RS13800at 2879.287 kb on - strand, within BWI76_RS13800at 2879.342 kb on - strand, within BWI76_RS13800at 2879.566 kb on - strandat 2880.291 kb on - strand, within BWI76_RS13805at 2880.291 kb on - strand, within BWI76_RS13805at 2880.417 kb on + strandat 2880.422 kb on + strandat 2880.450 kb on + strandat 2880.671 kb on + strand, within BWI76_RS13810at 2880.786 kb on - strand, within BWI76_RS13810at 2880.800 kb on + strand, within BWI76_RS13810at 2880.882 kb on - strand, within BWI76_RS13810at 2880.927 kb on - strand, within BWI76_RS13810at 2881.072 kb on + strand, within BWI76_RS13810at 2881.107 kb on - strand, within BWI76_RS13810

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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2,878,925 + BWI76_RS13800 0.43 -0.4
2,878,968 + BWI76_RS13800 0.47 -0.4
2,879,023 + BWI76_RS13800 0.52 -0.4
2,879,287 - BWI76_RS13800 0.78 -0.1
2,879,342 - BWI76_RS13800 0.84 +0.1
2,879,566 - -1.5
2,880,291 - BWI76_RS13805 0.89 +0.2
2,880,291 - BWI76_RS13805 0.89 +1.0
2,880,417 + +0.1
2,880,422 + +0.5
2,880,450 + -0.7
2,880,671 + BWI76_RS13810 0.12 +1.2
2,880,786 - BWI76_RS13810 0.24 +0.2
2,880,800 + BWI76_RS13810 0.25 -1.4
2,880,882 - BWI76_RS13810 0.34 -1.2
2,880,927 - BWI76_RS13810 0.38 +0.2
2,881,072 + BWI76_RS13810 0.54 +0.4
2,881,107 - BWI76_RS13810 0.57 -0.5

Or see this region's nucleotide sequence