Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06180

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06170 and BWI76_RS06175 are separated by 116 nucleotidesBWI76_RS06175 and BWI76_RS06180 overlap by 4 nucleotidesBWI76_RS06180 and BWI76_RS06185 are separated by 334 nucleotidesBWI76_RS06185 and BWI76_RS06190 are separated by 71 nucleotides BWI76_RS06170: BWI76_RS06170 - pyrroline-5-carboxylate reductase, at 1,295,963 to 1,296,772 _RS06170 BWI76_RS06175: BWI76_RS06175 - DUF188 domain-containing protein, at 1,296,889 to 1,297,347 _RS06175 BWI76_RS06180: BWI76_RS06180 - hypothetical protein, at 1,297,344 to 1,298,042 _RS06180 BWI76_RS06185: BWI76_RS06185 - shikimate kinase II, at 1,298,377 to 1,298,904 _RS06185 BWI76_RS06190: BWI76_RS06190 - hypothetical protein, at 1,298,976 to 1,299,167 _RS06190 Position (kb) 1297 1298 1299Strain fitness (log2 ratio) -2 -1 0 1 2at 1296.958 kb on - strand, within BWI76_RS06175at 1297.039 kb on + strand, within BWI76_RS06175at 1297.173 kb on + strand, within BWI76_RS06175at 1297.405 kb on + strandat 1297.546 kb on - strand, within BWI76_RS06180at 1297.580 kb on - strand, within BWI76_RS06180at 1297.853 kb on + strand, within BWI76_RS06180at 1298.038 kb on - strandat 1298.039 kb on + strandat 1298.052 kb on - strandat 1298.125 kb on - strandat 1298.125 kb on - strandat 1298.125 kb on - strandat 1298.321 kb on - strandat 1298.359 kb on + strandat 1298.367 kb on - strandat 1298.367 kb on - strandat 1298.456 kb on + strand, within BWI76_RS06185at 1298.464 kb on - strand, within BWI76_RS06185at 1298.500 kb on - strand, within BWI76_RS06185at 1298.615 kb on + strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.645 kb on - strand, within BWI76_RS06185at 1298.672 kb on + strand, within BWI76_RS06185at 1298.705 kb on - strand, within BWI76_RS06185at 1298.762 kb on + strand, within BWI76_RS06185at 1298.805 kb on - strand, within BWI76_RS06185at 1298.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,296,958 - BWI76_RS06175 0.15 +0.7
1,297,039 + BWI76_RS06175 0.33 -0.5
1,297,173 + BWI76_RS06175 0.62 -0.0
1,297,405 + -0.1
1,297,546 - BWI76_RS06180 0.29 -0.8
1,297,580 - BWI76_RS06180 0.34 -0.6
1,297,853 + BWI76_RS06180 0.73 -1.0
1,298,038 - -0.7
1,298,039 + +0.7
1,298,052 - +0.7
1,298,125 - -1.5
1,298,125 - -0.3
1,298,125 - +0.2
1,298,321 - +0.4
1,298,359 + -0.0
1,298,367 - -1.4
1,298,367 - +1.3
1,298,456 + BWI76_RS06185 0.15 +2.3
1,298,464 - BWI76_RS06185 0.16 -0.4
1,298,500 - BWI76_RS06185 0.23 -1.1
1,298,615 + BWI76_RS06185 0.45 -0.7
1,298,623 - BWI76_RS06185 0.47 -0.9
1,298,623 - BWI76_RS06185 0.47 -1.8
1,298,623 - BWI76_RS06185 0.47 -0.7
1,298,623 - BWI76_RS06185 0.47 -1.7
1,298,645 - BWI76_RS06185 0.51 -0.1
1,298,672 + BWI76_RS06185 0.56 -0.6
1,298,705 - BWI76_RS06185 0.62 -1.1
1,298,762 + BWI76_RS06185 0.73 -1.3
1,298,805 - BWI76_RS06185 0.81 -1.9
1,298,898 - -1.5

Or see this region's nucleotide sequence