Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3888 and Shewana3_3889 are separated by 262 nucleotides Shewana3_3889 and Shewana3_3890 overlap by 1 nucleotides Shewana3_3890 and Shewana3_3891 are separated by 24 nucleotides Shewana3_3891 and Shewana3_3892 are separated by 48 nucleotides
Shewana3_3888: Shewana3_3888 - ribulose-5-phosphate 3-epimerase (RefSeq), at 4,667,789 to 4,668,466
_3888
Shewana3_3889: Shewana3_3889 - hypothetical protein (RefSeq), at 4,668,729 to 4,669,094
_3889
Shewana3_3890: Shewana3_3890 - hypothetical protein (RefSeq), at 4,669,094 to 4,669,279
_3890
Shewana3_3891: Shewana3_3891 - DNA adenine methylase (RefSeq), at 4,669,304 to 4,670,143
_3891
Shewana3_3892: Shewana3_3892 - sporulation domain-containing protein (RefSeq), at 4,670,192 to 4,671,607
_3892
Position (kb) 4669
4670
4671 Strain fitness (log2 ratio) -1
0
1
2 at 4668.822 kb on + strand, within Shewana3_3889 at 4668.836 kb on - strand, within Shewana3_3889 at 4668.945 kb on - strand, within Shewana3_3889 at 4668.955 kb on - strand, within Shewana3_3889 at 4669.123 kb on - strand, within Shewana3_3890 at 4669.234 kb on - strand, within Shewana3_3890 at 4669.253 kb on - strand, within Shewana3_3890 at 4670.066 kb on - strand at 4670.362 kb on - strand, within Shewana3_3892 at 4670.419 kb on + strand, within Shewana3_3892 at 4670.424 kb on + strand, within Shewana3_3892 at 4670.432 kb on - strand, within Shewana3_3892 at 4670.573 kb on - strand, within Shewana3_3892 at 4670.602 kb on - strand, within Shewana3_3892 at 4670.743 kb on + strand, within Shewana3_3892 at 4670.892 kb on + strand, within Shewana3_3892 at 4670.915 kb on - strand, within Shewana3_3892 at 4670.999 kb on - strand, within Shewana3_3892 at 4671.074 kb on - strand, within Shewana3_3892 at 4671.092 kb on - strand, within Shewana3_3892 at 4671.122 kb on + strand, within Shewana3_3892
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,668,822 + Shewana3_3889 0.25 +0.7 4,668,836 - Shewana3_3889 0.29 -1.5 4,668,945 - Shewana3_3889 0.59 +0.4 4,668,955 - Shewana3_3889 0.62 -0.9 4,669,123 - Shewana3_3890 0.16 -1.6 4,669,234 - Shewana3_3890 0.75 -1.2 4,669,253 - Shewana3_3890 0.85 -0.9 4,670,066 - -0.9 4,670,362 - Shewana3_3892 0.12 -1.4 4,670,419 + Shewana3_3892 0.16 -0.4 4,670,424 + Shewana3_3892 0.16 -0.6 4,670,432 - Shewana3_3892 0.17 -0.5 4,670,573 - Shewana3_3892 0.27 -0.2 4,670,602 - Shewana3_3892 0.29 -0.3 4,670,743 + Shewana3_3892 0.39 +1.8 4,670,892 + Shewana3_3892 0.49 -0.6 4,670,915 - Shewana3_3892 0.51 -0.4 4,670,999 - Shewana3_3892 0.57 +0.6 4,671,074 - Shewana3_3892 0.62 +0.7 4,671,092 - Shewana3_3892 0.64 -0.5 4,671,122 + Shewana3_3892 0.66 -1.1
Or see this region's nucleotide sequence