Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1527

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1526 and Shewana3_1527 are separated by 151 nucleotidesShewana3_1527 and Shewana3_1528 are separated by 97 nucleotides Shewana3_1526: Shewana3_1526 - hypothetical protein (RefSeq), at 1,776,417 to 1,777,379 _1526 Shewana3_1527: Shewana3_1527 - transposase IS200-family protein (RefSeq), at 1,777,531 to 1,777,968 _1527 Shewana3_1528: Shewana3_1528 - short chain dehydrogenase (RefSeq), at 1,778,066 to 1,778,803 _1528 Position (kb) 1777 1778Strain fitness (log2 ratio) -1 0 1at 1776.740 kb on - strand, within Shewana3_1526at 1776.793 kb on - strand, within Shewana3_1526at 1776.820 kb on - strand, within Shewana3_1526at 1777.334 kb on + strandat 1777.342 kb on - strandat 1777.393 kb on - strandat 1777.558 kb on + strandat 1777.602 kb on - strand, within Shewana3_1527at 1777.602 kb on - strand, within Shewana3_1527at 1777.602 kb on - strand, within Shewana3_1527at 1778.280 kb on - strand, within Shewana3_1528at 1778.646 kb on - strand, within Shewana3_1528

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,776,740 - Shewana3_1526 0.34 +1.0
1,776,793 - Shewana3_1526 0.39 +1.0
1,776,820 - Shewana3_1526 0.42 +0.0
1,777,334 + +1.0
1,777,342 - +1.0
1,777,393 - +1.0
1,777,558 + +1.0
1,777,602 - Shewana3_1527 0.16 -0.1
1,777,602 - Shewana3_1527 0.16 +0.8
1,777,602 - Shewana3_1527 0.16 -0.8
1,778,280 - Shewana3_1528 0.29 +0.8
1,778,646 - Shewana3_1528 0.79 +0.2

Or see this region's nucleotide sequence