Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1418

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0056 and Shewana3_R0057 are separated by 41 nucleotidesShewana3_R0057 and Shewana3_R0058 are separated by 32 nucleotidesShewana3_R0058 and Shewana3_R0059 are separated by 48 nucleotidesShewana3_R0059 and gltX are separated by 588 nucleotidesgltX and Shewana3_R0060 are separated by 104 nucleotidesShewana3_R0060 and Shewana3_R0061 are separated by 67 nucleotidesShewana3_R0061 and Shewana3_R0062 are separated by 107 nucleotidesShewana3_R0062 and Shewana3_R0063 are separated by 64 nucleotidesShewana3_R0063 and Shewana3_R0064 are separated by 180 nucleotides Shewana3_R0056: Shewana3_R0056 - tRNA-Val (RefSeq), at 1,642,825 to 1,642,900 _R0056 Shewana3_R0057: Shewana3_R0057 - tRNA-Val (RefSeq), at 1,642,942 to 1,643,017 _R0057 Shewana3_R0058: Shewana3_R0058 - tRNA-Val (RefSeq), at 1,643,050 to 1,643,125 _R0058 Shewana3_R0059: Shewana3_R0059 - tRNA-Val (RefSeq), at 1,643,174 to 1,643,249 _R0059 Shewana3_1418: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,643,838 to 1,645,247 gltX Shewana3_R0060: Shewana3_R0060 - tRNA-Ala (RefSeq), at 1,645,352 to 1,645,427 _R0060 Shewana3_R0061: Shewana3_R0061 - tRNA-Glu (RefSeq), at 1,645,495 to 1,645,570 _R0061 Shewana3_R0062: Shewana3_R0062 - tRNA-Ala (RefSeq), at 1,645,678 to 1,645,753 _R0062 Shewana3_R0063: Shewana3_R0063 - tRNA-Glu (RefSeq), at 1,645,818 to 1,645,893 _R0063 Shewana3_R0064: Shewana3_R0064 - tRNA-Glu (RefSeq), at 1,646,074 to 1,646,149 _R0064 Position (kb) 1643 1644 1645 1646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1643.424 kb on - strandat 1643.538 kb on - strandat 1643.697 kb on + strandat 1643.697 kb on + strandat 1643.697 kb on + strandat 1643.698 kb on - strandat 1643.705 kb on - strandat 1643.705 kb on - strandat 1643.715 kb on - strandat 1643.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,643,424 - +1.2
1,643,538 - +0.3
1,643,697 + +0.2
1,643,697 + +1.7
1,643,697 + +2.2
1,643,698 - -3.6
1,643,705 - -0.6
1,643,705 - -0.5
1,643,715 - +0.2
1,643,758 + -2.7

Or see this region's nucleotide sequence