Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0768

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntipk and Shewana3_0767 are separated by 1 nucleotidesShewana3_0767 and hemA are separated by 254 nucleotideshemA and prfA are separated by 14 nucleotides Shewana3_0766: ipk - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (RefSeq), at 888,596 to 889,450 ipk Shewana3_0767: Shewana3_0767 - outer membrane lipoprotein LolB (RefSeq), at 889,452 to 890,096 _0767 Shewana3_0768: hemA - glutamyl-tRNA reductase (RefSeq), at 890,351 to 891,601 hemA Shewana3_0769: prfA - peptide chain release factor 1 (RefSeq), at 891,616 to 892,707 prfA Position (kb) 890 891 892Strain fitness (log2 ratio) -2 -1 0 1 2 3at 889.480 kb on - strandat 890.314 kb on + strandat 891.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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889,480 - +0.1
890,314 + +3.2
891,595 + -2.0

Or see this region's nucleotide sequence