Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0752 and Shewana3_0753 are separated by 83 nucleotides Shewana3_0753 and Shewana3_0754 are separated by 199 nucleotides
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039
_0753
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1 at 872.640 kb on - strand, within Shewana3_0752 at 872.678 kb on - strand, within Shewana3_0752 at 872.915 kb on - strand, within Shewana3_0752 at 873.077 kb on + strand, within Shewana3_0752 at 873.083 kb on - strand, within Shewana3_0752 at 873.143 kb on - strand, within Shewana3_0752 at 873.146 kb on + strand, within Shewana3_0752 at 873.261 kb on + strand, within Shewana3_0752 at 873.452 kb on + strand at 873.526 kb on - strand at 873.555 kb on + strand, within Shewana3_0753 at 873.686 kb on - strand, within Shewana3_0753 at 873.957 kb on - strand, within Shewana3_0753 at 874.080 kb on - strand at 874.254 kb on + strand at 874.264 kb on + strand at 874.303 kb on + strand at 874.317 kb on + strand at 874.354 kb on - strand at 874.378 kb on + strand at 874.388 kb on - strand at 874.539 kb on + strand, within Shewana3_0754 at 874.775 kb on + strand, within Shewana3_0754 at 874.782 kb on - strand, within Shewana3_0754
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 872,640 - Shewana3_0752 0.40 -1.5 872,678 - Shewana3_0752 0.43 -0.0 872,915 - Shewana3_0752 0.61 -0.7 873,077 + Shewana3_0752 0.74 -0.3 873,083 - Shewana3_0752 0.74 -0.9 873,143 - Shewana3_0752 0.79 -0.7 873,146 + Shewana3_0752 0.79 -0.6 873,261 + Shewana3_0752 0.88 +0.1 873,452 + +0.8 873,526 - -0.0 873,555 + Shewana3_0753 0.11 -0.4 873,686 - Shewana3_0753 0.35 -1.3 873,957 - Shewana3_0753 0.85 +0.3 874,080 - -0.7 874,254 + -0.4 874,264 + -0.8 874,303 + +0.4 874,317 + +0.1 874,354 - +0.3 874,378 + -0.3 874,388 - +0.5 874,539 + Shewana3_0754 0.12 +0.2 874,775 + Shewana3_0754 0.21 -0.4 874,782 - Shewana3_0754 0.21 -1.9
Or see this region's nucleotide sequence