Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0385

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0384 and Shewana3_0385 are separated by 60 nucleotidesShewana3_0385 and hemC are separated by 46 nucleotides Shewana3_0384: Shewana3_0384 - protein of unknown function DUF513, hemX (RefSeq), at 444,455 to 445,696 _0384 Shewana3_0385: Shewana3_0385 - uroporphyrinogen III synthase HEM4 (RefSeq), at 445,757 to 446,455 _0385 Shewana3_0386: hemC - porphobilinogen deaminase (RefSeq), at 446,502 to 447,434 hemC Position (kb) 445 446 447Strain fitness (log2 ratio) -2 -1 0 1at 444.768 kb on - strand, within Shewana3_0384at 444.769 kb on - strand, within Shewana3_0384at 444.785 kb on - strand, within Shewana3_0384at 444.913 kb on - strand, within Shewana3_0384at 444.957 kb on - strand, within Shewana3_0384at 445.084 kb on + strand, within Shewana3_0384at 445.179 kb on + strand, within Shewana3_0384at 445.200 kb on - strand, within Shewana3_0384at 445.214 kb on + strand, within Shewana3_0384at 445.315 kb on - strand, within Shewana3_0384at 445.439 kb on - strand, within Shewana3_0384at 445.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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444,768 - Shewana3_0384 0.25 -1.8
444,769 - Shewana3_0384 0.25 -0.6
444,785 - Shewana3_0384 0.27 +0.4
444,913 - Shewana3_0384 0.37 +0.6
444,957 - Shewana3_0384 0.40 -1.0
445,084 + Shewana3_0384 0.51 -0.7
445,179 + Shewana3_0384 0.58 +1.4
445,200 - Shewana3_0384 0.60 -2.7
445,214 + Shewana3_0384 0.61 -0.6
445,315 - Shewana3_0384 0.69 +1.4
445,439 - Shewana3_0384 0.79 +1.4
445,588 + -1.2

Or see this region's nucleotide sequence