Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4620 and Pf1N1B4_4621 are separated by 186 nucleotides Pf1N1B4_4621 and Pf1N1B4_4622 are separated by 194 nucleotides
Pf1N1B4_4620 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 5,095,299 to 5,096,015
_4620
Pf1N1B4_4621 - L-arabonate dehydratase (EC 4.2.1.25), at 5,096,202 to 5,097,938
_4621
Pf1N1B4_4622 - Nitrate/nitrite transporter, at 5,098,133 to 5,099,455
_4622
Position (kb) 5096
5097
5098 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5095.211 kb on - strand at 5095.609 kb on + strand at 5096.087 kb on + strand at 5096.087 kb on + strand at 5096.140 kb on - strand at 5096.178 kb on - strand at 5096.294 kb on - strand at 5096.319 kb on + strand at 5096.320 kb on - strand at 5096.320 kb on - strand at 5096.680 kb on + strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.978 kb on - strand, within Pf1N1B4_4621 at 5097.214 kb on - strand, within Pf1N1B4_4621 at 5098.104 kb on + strand at 5098.104 kb on + strand at 5098.104 kb on + strand at 5098.105 kb on - strand at 5098.105 kb on - strand at 5098.105 kb on - strand at 5098.316 kb on + strand at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.505 kb on + strand, within Pf1N1B4_4622 at 5098.506 kb on - strand, within Pf1N1B4_4622 at 5098.508 kb on + strand at 5098.508 kb on + strand, within Pf1N1B4_4622 at 5098.508 kb on + strand, within Pf1N1B4_4622 at 5098.508 kb on + strand at 5098.508 kb on + strand, within Pf1N1B4_4622 at 5098.509 kb on - strand, within Pf1N1B4_4622 at 5098.802 kb on + strand, within Pf1N1B4_4622 at 5098.802 kb on + strand, within Pf1N1B4_4622 at 5098.898 kb on + strand, within Pf1N1B4_4622 at 5098.899 kb on - strand, within Pf1N1B4_4622 at 5098.899 kb on - strand, within Pf1N1B4_4622
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 5,095,211 - +1.5 5,095,609 + -0.5 5,096,087 + -0.3 5,096,087 + +1.0 5,096,140 - +0.6 5,096,178 - -1.1 5,096,294 - -0.8 5,096,319 + +0.7 5,096,320 - +1.6 5,096,320 - +0.4 5,096,680 + Pf1N1B4_4621 0.28 -0.9 5,096,681 - Pf1N1B4_4621 0.28 -0.9 5,096,681 - Pf1N1B4_4621 0.28 -0.6 5,096,681 - Pf1N1B4_4621 0.28 +0.4 5,096,681 - Pf1N1B4_4621 0.28 +0.4 5,096,681 - Pf1N1B4_4621 0.28 -1.9 5,096,681 - Pf1N1B4_4621 0.28 -0.6 5,096,681 - Pf1N1B4_4621 0.28 -1.7 5,096,978 - Pf1N1B4_4621 0.45 -0.7 5,097,214 - Pf1N1B4_4621 0.58 -0.6 5,098,104 + -2.4 5,098,104 + +1.0 5,098,104 + +0.3 5,098,105 - -1.6 5,098,105 - +1.0 5,098,105 - -0.4 5,098,316 + -0.6 5,098,448 + Pf1N1B4_4622 0.24 -0.1 5,098,448 + Pf1N1B4_4622 0.24 -0.6 5,098,448 + Pf1N1B4_4622 0.24 -0.2 5,098,448 + Pf1N1B4_4622 0.24 +1.0 5,098,448 + Pf1N1B4_4622 0.24 -0.3 5,098,449 - Pf1N1B4_4622 0.24 -1.6 5,098,449 - Pf1N1B4_4622 0.24 -1.1 5,098,449 - Pf1N1B4_4622 0.24 -0.1 5,098,449 - Pf1N1B4_4622 0.24 +0.2 5,098,505 + Pf1N1B4_4622 0.28 +0.0 5,098,506 - Pf1N1B4_4622 0.28 +0.4 5,098,508 + +0.4 5,098,508 + Pf1N1B4_4622 0.28 +0.8 5,098,508 + Pf1N1B4_4622 0.28 +1.3 5,098,508 + +2.3 5,098,508 + Pf1N1B4_4622 0.28 -0.9 5,098,509 - Pf1N1B4_4622 0.28 -2.0 5,098,802 + Pf1N1B4_4622 0.51 +0.0 5,098,802 + Pf1N1B4_4622 0.51 -0.3 5,098,898 + Pf1N1B4_4622 0.58 +0.4 5,098,899 - Pf1N1B4_4622 0.58 +0.9 5,098,899 - Pf1N1B4_4622 0.58 -1.0
Or see this region's nucleotide sequence