Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4395 and Pf1N1B4_4396 are separated by 126 nucleotides Pf1N1B4_4396 and Pf1N1B4_4397 are separated by 18 nucleotides
Pf1N1B4_4395 - Transcriptional regulator RpiR in protein degradation cluster, at 4,854,888 to 4,855,796
_4395
Pf1N1B4_4396 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,855,923 to 4,856,687
_4396
Pf1N1B4_4397 - Succinylglutamate desuccinylase/aspartoacylase, at 4,856,706 to 4,857,818
_4397
Position (kb)
4855
4856
4857 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4854.928 kb on + strand at 4854.978 kb on - strand at 4855.330 kb on + strand, within Pf1N1B4_4395 at 4855.358 kb on - strand, within Pf1N1B4_4395 at 4855.688 kb on + strand, within Pf1N1B4_4395 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.558 kb on + strand at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.658 kb on - strand at 4856.683 kb on + strand at 4856.693 kb on + strand at 4856.804 kb on - strand at 4856.947 kb on + strand at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 4,854,928 + +1.8 4,854,978 - -1.5 4,855,330 + Pf1N1B4_4395 0.49 -1.0 4,855,358 - Pf1N1B4_4395 0.52 +0.0 4,855,688 + Pf1N1B4_4395 0.88 +0.3 4,856,240 + Pf1N1B4_4396 0.41 -0.1 4,856,240 + Pf1N1B4_4396 0.41 -0.9 4,856,241 - Pf1N1B4_4396 0.42 -0.9 4,856,241 - Pf1N1B4_4396 0.42 +0.2 4,856,241 - Pf1N1B4_4396 0.42 -1.3 4,856,241 - Pf1N1B4_4396 0.42 +0.6 4,856,558 + +0.7 4,856,558 + Pf1N1B4_4396 0.83 +1.5 4,856,558 + Pf1N1B4_4396 0.83 +1.5 4,856,558 + Pf1N1B4_4396 0.83 +0.0 4,856,658 - -0.8 4,856,683 + -1.9 4,856,693 + -1.5 4,856,804 - -0.5 4,856,947 + -2.1 4,857,286 + Pf1N1B4_4397 0.52 +0.0 4,857,286 + Pf1N1B4_4397 0.52 -0.8 4,857,286 + Pf1N1B4_4397 0.52 +0.5 4,857,286 + Pf1N1B4_4397 0.52 +0.0 4,857,286 + Pf1N1B4_4397 0.52 +0.5 4,857,286 + -0.5 4,857,287 - Pf1N1B4_4397 0.52 -1.5 4,857,287 - Pf1N1B4_4397 0.52 +1.5 4,857,287 - -0.5
Or see this region's nucleotide sequence