Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2688 and Pf1N1B4_2689 are separated by 1 nucleotides Pf1N1B4_2689 and Pf1N1B4_2690 are separated by 72 nucleotides Pf1N1B4_2690 and Pf1N1B4_2691 are separated by 9 nucleotides
Pf1N1B4_2688 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 3,025,180 to 3,026,427
_2688
Pf1N1B4_2689 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 3,026,429 to 3,027,118
_2689
Pf1N1B4_2690 - Iojap protein, at 3,027,191 to 3,027,685
_2690
Pf1N1B4_2691 - LSU m3Psi1915 methyltransferase RlmH, at 3,027,695 to 3,028,162
_2691
Position (kb)
3026
3027
3028 Strain fitness (log2 ratio)
-1
0
1
2 at 3025.531 kb on + strand, within Pf1N1B4_2688 at 3025.753 kb on + strand, within Pf1N1B4_2688 at 3025.858 kb on + strand, within Pf1N1B4_2688 at 3025.858 kb on + strand, within Pf1N1B4_2688 at 3025.858 kb on + strand, within Pf1N1B4_2688 at 3025.918 kb on + strand, within Pf1N1B4_2688 at 3026.043 kb on + strand at 3026.098 kb on + strand, within Pf1N1B4_2688 at 3026.157 kb on + strand, within Pf1N1B4_2688 at 3026.157 kb on + strand, within Pf1N1B4_2688 at 3026.157 kb on + strand, within Pf1N1B4_2688 at 3026.160 kb on + strand, within Pf1N1B4_2688 at 3026.262 kb on + strand, within Pf1N1B4_2688 at 3026.322 kb on + strand at 3026.380 kb on + strand at 3026.380 kb on + strand at 3026.380 kb on + strand at 3026.380 kb on + strand at 3026.380 kb on + strand at 3027.152 kb on + strand at 3027.761 kb on + strand, within Pf1N1B4_2691
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,025,531 + Pf1N1B4_2688 0.28 -0.5 3,025,753 + Pf1N1B4_2688 0.46 +0.2 3,025,858 + Pf1N1B4_2688 0.54 -0.3 3,025,858 + Pf1N1B4_2688 0.54 +0.2 3,025,858 + Pf1N1B4_2688 0.54 +0.2 3,025,918 + Pf1N1B4_2688 0.59 -0.3 3,026,043 + +0.2 3,026,098 + Pf1N1B4_2688 0.74 -0.2 3,026,157 + Pf1N1B4_2688 0.78 -1.3 3,026,157 + Pf1N1B4_2688 0.78 +0.2 3,026,157 + Pf1N1B4_2688 0.78 +1.5 3,026,160 + Pf1N1B4_2688 0.79 -1.1 3,026,262 + Pf1N1B4_2688 0.87 -0.2 3,026,322 + +0.2 3,026,380 + +1.8 3,026,380 + +0.2 3,026,380 + +0.2 3,026,380 + +0.0 3,026,380 + +1.2 3,027,152 + +0.2 3,027,761 + Pf1N1B4_2691 0.14 +0.2
Or see this region's nucleotide sequence