Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2645 and Pf1N1B4_2646 are separated by 31 nucleotides Pf1N1B4_2646 and Pf1N1B4_2647 overlap by 4 nucleotides Pf1N1B4_2647 and Pf1N1B4_2648 are separated by 117 nucleotides
Pf1N1B4_2645 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 2,983,999 to 2,984,871
_2645
Pf1N1B4_2646 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 2,984,903 to 2,985,637
_2646
Pf1N1B4_2647 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 2,985,634 to 2,986,098
_2647
Pf1N1B4_2648 - Ribonucleotide reductase transcriptional regulator NrdR, at 2,986,216 to 2,986,680
_2648
Position (kb)
2984
2985
2986 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2983.912 kb on - strand at 2983.948 kb on - strand at 2983.961 kb on - strand at 2983.961 kb on - strand at 2983.961 kb on - strand at 2983.961 kb on - strand at 2983.970 kb on + strand at 2983.971 kb on - strand at 2983.971 kb on - strand at 2983.971 kb on - strand at 2983.971 kb on - strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.001 kb on - strand at 2984.001 kb on - strand at 2984.001 kb on - strand at 2984.003 kb on + strand at 2984.003 kb on + strand at 2984.003 kb on + strand at 2984.003 kb on + strand at 2984.004 kb on - strand at 2984.004 kb on - strand at 2984.030 kb on + strand at 2984.030 kb on + strand at 2984.108 kb on + strand, within Pf1N1B4_2645 at 2984.108 kb on + strand, within Pf1N1B4_2645 at 2984.109 kb on - strand, within Pf1N1B4_2645 at 2984.109 kb on - strand, within Pf1N1B4_2645 at 2984.159 kb on + strand, within Pf1N1B4_2645 at 2984.159 kb on + strand, within Pf1N1B4_2645 at 2984.196 kb on - strand, within Pf1N1B4_2645 at 2984.393 kb on + strand, within Pf1N1B4_2645 at 2984.437 kb on + strand, within Pf1N1B4_2645 at 2984.437 kb on + strand, within Pf1N1B4_2645 at 2984.437 kb on + strand, within Pf1N1B4_2645 at 2984.438 kb on - strand, within Pf1N1B4_2645 at 2984.438 kb on - strand, within Pf1N1B4_2645 at 2984.438 kb on - strand, within Pf1N1B4_2645 at 2984.438 kb on - strand, within Pf1N1B4_2645 at 2984.708 kb on + strand, within Pf1N1B4_2645 at 2984.709 kb on - strand, within Pf1N1B4_2645 at 2984.709 kb on - strand, within Pf1N1B4_2645 at 2984.853 kb on - strand at 2984.853 kb on - strand at 2984.883 kb on + strand at 2984.883 kb on + strand at 2984.883 kb on + strand at 2984.884 kb on - strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.904 kb on + strand at 2984.905 kb on - strand at 2984.905 kb on - strand at 2984.905 kb on - strand at 2984.905 kb on - strand at 2984.905 kb on - strand at 2984.906 kb on + strand at 2984.906 kb on + strand at 2984.906 kb on + strand at 2984.906 kb on + strand at 2984.907 kb on - strand at 2984.907 kb on - strand at 2984.907 kb on - strand at 2984.907 kb on - strand at 2984.907 kb on - strand at 2985.001 kb on - strand, within Pf1N1B4_2646 at 2985.078 kb on + strand, within Pf1N1B4_2646 at 2985.079 kb on - strand, within Pf1N1B4_2646 at 2985.079 kb on - strand, within Pf1N1B4_2646 at 2985.079 kb on - strand, within Pf1N1B4_2646 at 2985.178 kb on - strand, within Pf1N1B4_2646 at 2985.178 kb on - strand, within Pf1N1B4_2646 at 2985.178 kb on - strand, within Pf1N1B4_2646 at 2985.178 kb on - strand, within Pf1N1B4_2646 at 2985.391 kb on + strand, within Pf1N1B4_2646 at 2985.424 kb on - strand, within Pf1N1B4_2646 at 2985.520 kb on + strand, within Pf1N1B4_2646 at 2985.575 kb on + strand at 2985.575 kb on + strand at 2985.575 kb on + strand at 2985.576 kb on - strand at 2985.576 kb on - strand at 2985.576 kb on - strand at 2985.576 kb on - strand at 2985.577 kb on + strand at 2985.577 kb on + strand at 2985.578 kb on - strand at 2985.578 kb on - strand at 2985.578 kb on - strand at 2985.578 kb on - strand at 2985.844 kb on + strand, within Pf1N1B4_2647 at 2986.125 kb on - strand at 2986.140 kb on - strand at 2986.154 kb on - strand at 2986.154 kb on - strand at 2986.182 kb on - strand at 2986.585 kb on + strand, within Pf1N1B4_2648
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,983,912 - +1.8 2,983,948 - +0.2 2,983,961 - +1.0 2,983,961 - +0.2 2,983,961 - -1.8 2,983,961 - -0.8 2,983,970 + -0.0 2,983,971 - -0.2 2,983,971 - +1.8 2,983,971 - -0.2 2,983,971 - -0.8 2,984,000 + +1.2 2,984,000 + +0.8 2,984,000 + -0.3 2,984,000 + -1.0 2,984,000 + -0.1 2,984,000 + -1.3 2,984,000 + +1.2 2,984,001 - +0.2 2,984,001 - -0.8 2,984,001 - +1.4 2,984,003 + +0.1 2,984,003 + +0.2 2,984,003 + +0.2 2,984,003 + -0.1 2,984,004 - +0.2 2,984,004 - +3.1 2,984,030 + +1.2 2,984,030 + +0.7 2,984,108 + Pf1N1B4_2645 0.12 -0.5 2,984,108 + Pf1N1B4_2645 0.12 +0.6 2,984,109 - Pf1N1B4_2645 0.13 -1.3 2,984,109 - Pf1N1B4_2645 0.13 -0.3 2,984,159 + Pf1N1B4_2645 0.18 +0.4 2,984,159 + Pf1N1B4_2645 0.18 -0.1 2,984,196 - Pf1N1B4_2645 0.23 +1.8 2,984,393 + Pf1N1B4_2645 0.45 +2.6 2,984,437 + Pf1N1B4_2645 0.50 +3.2 2,984,437 + Pf1N1B4_2645 0.50 -1.3 2,984,437 + Pf1N1B4_2645 0.50 +0.2 2,984,438 - Pf1N1B4_2645 0.50 -0.8 2,984,438 - Pf1N1B4_2645 0.50 -0.1 2,984,438 - Pf1N1B4_2645 0.50 +0.2 2,984,438 - Pf1N1B4_2645 0.50 -2.6 2,984,708 + Pf1N1B4_2645 0.81 -0.8 2,984,709 - Pf1N1B4_2645 0.81 -2.2 2,984,709 - Pf1N1B4_2645 0.81 -0.5 2,984,853 - +0.2 2,984,853 - +2.2 2,984,883 + -0.8 2,984,883 + -0.3 2,984,883 + +1.0 2,984,884 - -0.1 2,984,904 + -0.3 2,984,904 + -0.8 2,984,904 + +0.7 2,984,904 + +0.7 2,984,904 + -0.2 2,984,904 + +2.1 2,984,904 + -0.5 2,984,904 + +0.2 2,984,905 - -0.8 2,984,905 - -0.4 2,984,905 - +0.2 2,984,905 - +0.3 2,984,905 - -1.3 2,984,906 + -0.8 2,984,906 + -0.0 2,984,906 + +1.7 2,984,906 + -0.8 2,984,907 - -1.3 2,984,907 - -1.6 2,984,907 - +0.2 2,984,907 - -0.6 2,984,907 - +0.2 2,985,001 - Pf1N1B4_2646 0.13 -0.1 2,985,078 + Pf1N1B4_2646 0.24 +0.7 2,985,079 - Pf1N1B4_2646 0.24 +1.2 2,985,079 - Pf1N1B4_2646 0.24 +0.6 2,985,079 - Pf1N1B4_2646 0.24 +1.2 2,985,178 - Pf1N1B4_2646 0.37 +0.5 2,985,178 - Pf1N1B4_2646 0.37 -0.6 2,985,178 - Pf1N1B4_2646 0.37 +1.7 2,985,178 - Pf1N1B4_2646 0.37 -1.1 2,985,391 + Pf1N1B4_2646 0.66 +0.2 2,985,424 - Pf1N1B4_2646 0.71 +0.2 2,985,520 + Pf1N1B4_2646 0.84 -0.2 2,985,575 + +0.8 2,985,575 + +0.2 2,985,575 + +3.6 2,985,576 - +0.2 2,985,576 - -0.5 2,985,576 - -0.2 2,985,576 - +1.2 2,985,577 + +1.4 2,985,577 + +1.2 2,985,578 - -1.3 2,985,578 - -0.8 2,985,578 - -0.8 2,985,578 - -1.1 2,985,844 + Pf1N1B4_2647 0.45 -0.6 2,986,125 - -0.8 2,986,140 - +0.2 2,986,154 - -0.8 2,986,154 - -0.8 2,986,182 - +0.6 2,986,585 + Pf1N1B4_2648 0.79 -1.1
Or see this region's nucleotide sequence