Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1757

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1755 and Pf1N1B4_1756 overlap by 13 nucleotidesPf1N1B4_1756 and Pf1N1B4_1757 overlap by 4 nucleotidesPf1N1B4_1757 and Pf1N1B4_1758 overlap by 17 nucleotides Pf1N1B4_1755 - FIG00955799: hypothetical protein, at 2,004,037 to 2,004,981 _1755 Pf1N1B4_1756 - Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases, at 2,004,969 to 2,005,754 _1756 Pf1N1B4_1757 - Adenylylsulfate kinase (EC 2.7.1.25), at 2,005,751 to 2,006,356 _1757 Pf1N1B4_1758 - Outer membrane protein assembly factor YaeT precursor, at 2,006,340 to 2,007,854 _1758 Position (kb) 2005 2006 2007Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2005.082 kb on + strand, within Pf1N1B4_1756at 2005.432 kb on + strand, within Pf1N1B4_1756at 2005.432 kb on + strand, within Pf1N1B4_1756at 2005.639 kb on + strand, within Pf1N1B4_1756at 2005.639 kb on + strand, within Pf1N1B4_1756at 2005.640 kb on - strand, within Pf1N1B4_1756at 2005.640 kb on - strand, within Pf1N1B4_1756at 2005.642 kb on + strand, within Pf1N1B4_1756at 2005.642 kb on + strand, within Pf1N1B4_1756at 2006.341 kb on + strandat 2006.485 kb on - strandat 2006.485 kb on - strandat 2006.701 kb on + strand, within Pf1N1B4_1758at 2006.701 kb on + strand, within Pf1N1B4_1758at 2006.702 kb on - strand, within Pf1N1B4_1758at 2006.702 kb on - strand, within Pf1N1B4_1758at 2006.715 kb on + strand, within Pf1N1B4_1758at 2006.716 kb on - strand, within Pf1N1B4_1758at 2006.876 kb on - strand, within Pf1N1B4_1758at 2006.960 kb on - strand, within Pf1N1B4_1758at 2007.043 kb on + strandat 2007.043 kb on + strand, within Pf1N1B4_1758at 2007.043 kb on + strand, within Pf1N1B4_1758at 2007.043 kb on + strand, within Pf1N1B4_1758at 2007.043 kb on + strand, within Pf1N1B4_1758at 2007.043 kb on + strand, within Pf1N1B4_1758at 2007.043 kb on + strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.044 kb on - strand, within Pf1N1B4_1758at 2007.178 kb on + strand, within Pf1N1B4_1758at 2007.230 kb on + strand, within Pf1N1B4_1758at 2007.310 kb on + strand, within Pf1N1B4_1758at 2007.310 kb on + strand, within Pf1N1B4_1758at 2007.311 kb on - strand, within Pf1N1B4_1758

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,005,082 + Pf1N1B4_1756 0.14 -0.1
2,005,432 + Pf1N1B4_1756 0.59 +3.6
2,005,432 + Pf1N1B4_1756 0.59 +0.9
2,005,639 + Pf1N1B4_1756 0.85 +0.8
2,005,639 + Pf1N1B4_1756 0.85 +0.5
2,005,640 - Pf1N1B4_1756 0.85 -0.5
2,005,640 - Pf1N1B4_1756 0.85 +1.5
2,005,642 + Pf1N1B4_1756 0.86 +1.0
2,005,642 + Pf1N1B4_1756 0.86 +0.5
2,006,341 + +0.2
2,006,485 - +0.5
2,006,485 - +0.2
2,006,701 + Pf1N1B4_1758 0.24 +0.5
2,006,701 + Pf1N1B4_1758 0.24 -1.1
2,006,702 - Pf1N1B4_1758 0.24 +0.9
2,006,702 - Pf1N1B4_1758 0.24 +0.5
2,006,715 + Pf1N1B4_1758 0.25 +0.9
2,006,716 - Pf1N1B4_1758 0.25 +0.5
2,006,876 - Pf1N1B4_1758 0.35 -0.1
2,006,960 - Pf1N1B4_1758 0.41 +0.3
2,007,043 + +0.5
2,007,043 + Pf1N1B4_1758 0.46 -0.5
2,007,043 + Pf1N1B4_1758 0.46 +2.1
2,007,043 + Pf1N1B4_1758 0.46 -0.3
2,007,043 + Pf1N1B4_1758 0.46 +1.2
2,007,043 + Pf1N1B4_1758 0.46 -2.1
2,007,043 + Pf1N1B4_1758 0.46 -0.6
2,007,044 - Pf1N1B4_1758 0.46 +0.9
2,007,044 - Pf1N1B4_1758 0.46 +0.7
2,007,044 - Pf1N1B4_1758 0.46 -0.5
2,007,044 - Pf1N1B4_1758 0.46 +0.6
2,007,044 - Pf1N1B4_1758 0.46 +1.5
2,007,044 - Pf1N1B4_1758 0.46 -0.4
2,007,044 - Pf1N1B4_1758 0.46 -0.9
2,007,044 - Pf1N1B4_1758 0.46 +0.9
2,007,044 - Pf1N1B4_1758 0.46 +0.5
2,007,044 - Pf1N1B4_1758 0.46 -0.0
2,007,178 + Pf1N1B4_1758 0.55 -0.0
2,007,230 + Pf1N1B4_1758 0.59 -0.3
2,007,310 + Pf1N1B4_1758 0.64 +1.2
2,007,310 + Pf1N1B4_1758 0.64 -0.1
2,007,311 - Pf1N1B4_1758 0.64 -1.1

Or see this region's nucleotide sequence