Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1755 and Pf1N1B4_1756 overlap by 13 nucleotides Pf1N1B4_1756 and Pf1N1B4_1757 overlap by 4 nucleotides Pf1N1B4_1757 and Pf1N1B4_1758 overlap by 17 nucleotides
Pf1N1B4_1755 - FIG00955799: hypothetical protein, at 2,004,037 to 2,004,981
_1755
Pf1N1B4_1756 - Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases, at 2,004,969 to 2,005,754
_1756
Pf1N1B4_1757 - Adenylylsulfate kinase (EC 2.7.1.25), at 2,005,751 to 2,006,356
_1757
Pf1N1B4_1758 - Outer membrane protein assembly factor YaeT precursor, at 2,006,340 to 2,007,854
_1758
Position (kb)
2005
2006
2007 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2005.082 kb on + strand, within Pf1N1B4_1756 at 2005.432 kb on + strand, within Pf1N1B4_1756 at 2005.432 kb on + strand, within Pf1N1B4_1756 at 2005.639 kb on + strand, within Pf1N1B4_1756 at 2005.639 kb on + strand, within Pf1N1B4_1756 at 2005.640 kb on - strand, within Pf1N1B4_1756 at 2005.640 kb on - strand, within Pf1N1B4_1756 at 2005.642 kb on + strand, within Pf1N1B4_1756 at 2005.642 kb on + strand, within Pf1N1B4_1756 at 2006.341 kb on + strand at 2006.485 kb on - strand at 2006.485 kb on - strand at 2006.701 kb on + strand, within Pf1N1B4_1758 at 2006.701 kb on + strand, within Pf1N1B4_1758 at 2006.702 kb on - strand, within Pf1N1B4_1758 at 2006.702 kb on - strand, within Pf1N1B4_1758 at 2006.715 kb on + strand, within Pf1N1B4_1758 at 2006.716 kb on - strand, within Pf1N1B4_1758 at 2006.876 kb on - strand, within Pf1N1B4_1758 at 2006.960 kb on - strand, within Pf1N1B4_1758 at 2007.043 kb on + strand at 2007.043 kb on + strand, within Pf1N1B4_1758 at 2007.043 kb on + strand, within Pf1N1B4_1758 at 2007.043 kb on + strand, within Pf1N1B4_1758 at 2007.043 kb on + strand, within Pf1N1B4_1758 at 2007.043 kb on + strand, within Pf1N1B4_1758 at 2007.043 kb on + strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.044 kb on - strand, within Pf1N1B4_1758 at 2007.178 kb on + strand, within Pf1N1B4_1758 at 2007.230 kb on + strand, within Pf1N1B4_1758 at 2007.310 kb on + strand, within Pf1N1B4_1758 at 2007.310 kb on + strand, within Pf1N1B4_1758 at 2007.311 kb on - strand, within Pf1N1B4_1758
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,005,082 + Pf1N1B4_1756 0.14 -0.1 2,005,432 + Pf1N1B4_1756 0.59 +3.6 2,005,432 + Pf1N1B4_1756 0.59 +0.9 2,005,639 + Pf1N1B4_1756 0.85 +0.8 2,005,639 + Pf1N1B4_1756 0.85 +0.5 2,005,640 - Pf1N1B4_1756 0.85 -0.5 2,005,640 - Pf1N1B4_1756 0.85 +1.5 2,005,642 + Pf1N1B4_1756 0.86 +1.0 2,005,642 + Pf1N1B4_1756 0.86 +0.5 2,006,341 + +0.2 2,006,485 - +0.5 2,006,485 - +0.2 2,006,701 + Pf1N1B4_1758 0.24 +0.5 2,006,701 + Pf1N1B4_1758 0.24 -1.1 2,006,702 - Pf1N1B4_1758 0.24 +0.9 2,006,702 - Pf1N1B4_1758 0.24 +0.5 2,006,715 + Pf1N1B4_1758 0.25 +0.9 2,006,716 - Pf1N1B4_1758 0.25 +0.5 2,006,876 - Pf1N1B4_1758 0.35 -0.1 2,006,960 - Pf1N1B4_1758 0.41 +0.3 2,007,043 + +0.5 2,007,043 + Pf1N1B4_1758 0.46 -0.5 2,007,043 + Pf1N1B4_1758 0.46 +2.1 2,007,043 + Pf1N1B4_1758 0.46 -0.3 2,007,043 + Pf1N1B4_1758 0.46 +1.2 2,007,043 + Pf1N1B4_1758 0.46 -2.1 2,007,043 + Pf1N1B4_1758 0.46 -0.6 2,007,044 - Pf1N1B4_1758 0.46 +0.9 2,007,044 - Pf1N1B4_1758 0.46 +0.7 2,007,044 - Pf1N1B4_1758 0.46 -0.5 2,007,044 - Pf1N1B4_1758 0.46 +0.6 2,007,044 - Pf1N1B4_1758 0.46 +1.5 2,007,044 - Pf1N1B4_1758 0.46 -0.4 2,007,044 - Pf1N1B4_1758 0.46 -0.9 2,007,044 - Pf1N1B4_1758 0.46 +0.9 2,007,044 - Pf1N1B4_1758 0.46 +0.5 2,007,044 - Pf1N1B4_1758 0.46 -0.0 2,007,178 + Pf1N1B4_1758 0.55 -0.0 2,007,230 + Pf1N1B4_1758 0.59 -0.3 2,007,310 + Pf1N1B4_1758 0.64 +1.2 2,007,310 + Pf1N1B4_1758 0.64 -0.1 2,007,311 - Pf1N1B4_1758 0.64 -1.1
Or see this region's nucleotide sequence