Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1173

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1172 and Pf1N1B4_1173 are separated by 117 nucleotidesPf1N1B4_1173 and Pf1N1B4_1174 are separated by 259 nucleotides Pf1N1B4_1172 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 1,319,947 to 1,323,168 _1172 Pf1N1B4_1173 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 1,323,286 to 1,324,422 _1173 Pf1N1B4_1174 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 1,324,682 to 1,325,488 _1174 Position (kb) 1323 1324 1325Strain fitness (log2 ratio) -3 -2 -1 0 1at 1323.270 kb on - strandat 1323.270 kb on - strandat 1323.270 kb on - strandat 1323.270 kb on - strandat 1323.270 kb on - strandat 1323.288 kb on - strandat 1324.468 kb on - strandat 1324.486 kb on - strandat 1324.486 kb on - strandat 1324.518 kb on - strandat 1324.553 kb on - strandat 1324.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,323,270 - +0.2
1,323,270 - -0.8
1,323,270 - +0.6
1,323,270 - -0.4
1,323,270 - -1.4
1,323,288 - -0.4
1,324,468 - -0.4
1,324,486 - -1.8
1,324,486 - +0.6
1,324,518 - -3.0
1,324,553 - -0.8
1,324,553 - -0.4

Or see this region's nucleotide sequence