Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14155

Experiment: Recovery broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14140 and BBR_RS14145 are separated by 33 nucleotidesBBR_RS14145 and BBR_RS14150 are separated by 126 nucleotidesBBR_RS14150 and BBR_RS14155 are separated by 131 nucleotidesBBR_RS14155 and BBR_RS14160 are separated by 60 nucleotidesBBR_RS14160 and BBR_RS14165 are separated by 97 nucleotides BBR_RS14140: BBR_RS14140 - Ppx/GppA family phosphatase, at 949,005 to 950,006 _RS14140 BBR_RS14145: BBR_RS14145 - tRNA-Leu, at 950,040 to 950,119 _RS14145 BBR_RS14150: BBR_RS14150 - hypothetical protein, at 950,246 to 950,815 _RS14150 BBR_RS14155: BBR_RS14155 - L-serine ammonia-lyase, at 950,947 to 952,404 _RS14155 BBR_RS14160: BBR_RS14160 - peptidylprolyl isomerase, at 952,465 to 952,872 _RS14160 BBR_RS14165: BBR_RS14165 - transcription elongation factor GreA, at 952,970 to 953,449 _RS14165 Position (kb) 950 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 949.961 kb on + strandat 950.007 kb on - strandat 950.009 kb on - strandat 950.015 kb on + strandat 950.192 kb on + strandat 950.202 kb on + strandat 950.202 kb on + strandat 950.210 kb on - strandat 950.242 kb on + strandat 950.296 kb on - strandat 950.361 kb on + strand, within BBR_RS14150at 950.428 kb on - strand, within BBR_RS14150at 950.505 kb on + strand, within BBR_RS14150at 950.518 kb on + strand, within BBR_RS14150at 950.519 kb on + strand, within BBR_RS14150at 950.545 kb on - strand, within BBR_RS14150at 950.610 kb on + strand, within BBR_RS14150at 950.652 kb on + strand, within BBR_RS14150at 950.722 kb on + strand, within BBR_RS14150at 950.723 kb on + strand, within BBR_RS14150at 950.730 kb on + strand, within BBR_RS14150at 950.738 kb on - strand, within BBR_RS14150at 950.754 kb on - strand, within BBR_RS14150at 950.878 kb on + strandat 950.893 kb on + strandat 950.944 kb on + strandat 950.946 kb on + strandat 950.952 kb on - strandat 950.952 kb on - strandat 951.010 kb on - strandat 951.010 kb on - strandat 951.093 kb on + strand, within BBR_RS14155at 951.150 kb on - strand, within BBR_RS14155at 951.166 kb on + strand, within BBR_RS14155at 951.174 kb on - strand, within BBR_RS14155at 951.176 kb on + strand, within BBR_RS14155at 951.177 kb on + strand, within BBR_RS14155at 951.222 kb on + strand, within BBR_RS14155at 951.246 kb on + strand, within BBR_RS14155at 951.254 kb on - strand, within BBR_RS14155at 951.308 kb on - strand, within BBR_RS14155at 951.357 kb on - strand, within BBR_RS14155at 951.404 kb on + strand, within BBR_RS14155at 951.451 kb on - strand, within BBR_RS14155at 951.462 kb on + strand, within BBR_RS14155at 951.462 kb on + strand, within BBR_RS14155at 951.481 kb on - strand, within BBR_RS14155at 951.510 kb on + strand, within BBR_RS14155at 951.518 kb on - strand, within BBR_RS14155at 951.621 kb on + strand, within BBR_RS14155at 951.621 kb on + strand, within BBR_RS14155at 951.659 kb on - strand, within BBR_RS14155at 951.678 kb on - strand, within BBR_RS14155at 951.697 kb on + strand, within BBR_RS14155at 951.737 kb on + strand, within BBR_RS14155at 951.751 kb on + strand, within BBR_RS14155at 951.755 kb on - strand, within BBR_RS14155at 951.796 kb on - strand, within BBR_RS14155at 951.827 kb on + strand, within BBR_RS14155at 951.827 kb on + strand, within BBR_RS14155at 951.868 kb on + strand, within BBR_RS14155at 951.872 kb on - strand, within BBR_RS14155at 951.912 kb on + strand, within BBR_RS14155at 951.915 kb on + strand, within BBR_RS14155at 951.992 kb on + strand, within BBR_RS14155at 951.992 kb on + strand, within BBR_RS14155at 952.022 kb on - strand, within BBR_RS14155at 952.065 kb on + strand, within BBR_RS14155at 952.091 kb on + strand, within BBR_RS14155at 952.129 kb on - strand, within BBR_RS14155at 952.160 kb on + strand, within BBR_RS14155at 952.174 kb on - strand, within BBR_RS14155at 952.178 kb on + strand, within BBR_RS14155at 952.178 kb on + strand, within BBR_RS14155at 952.191 kb on + strand, within BBR_RS14155at 952.260 kb on + strandat 952.260 kb on + strandat 952.269 kb on - strandat 952.308 kb on + strandat 952.352 kb on + strandat 952.537 kb on + strand, within BBR_RS14160at 952.537 kb on + strand, within BBR_RS14160at 952.566 kb on + strand, within BBR_RS14160at 952.572 kb on + strand, within BBR_RS14160at 952.572 kb on + strand, within BBR_RS14160at 952.615 kb on + strand, within BBR_RS14160at 952.640 kb on + strand, within BBR_RS14160at 952.671 kb on + strand, within BBR_RS14160

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth
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949,961 + -0.4
950,007 - +0.3
950,009 - -1.2
950,015 + -0.3
950,192 + +0.1
950,202 + -0.7
950,202 + -0.6
950,210 - +0.2
950,242 + +0.6
950,296 - -0.3
950,361 + BBR_RS14150 0.20 +0.3
950,428 - BBR_RS14150 0.32 +0.6
950,505 + BBR_RS14150 0.45 -0.4
950,518 + BBR_RS14150 0.48 +0.5
950,519 + BBR_RS14150 0.48 +0.5
950,545 - BBR_RS14150 0.52 -0.9
950,610 + BBR_RS14150 0.64 +0.6
950,652 + BBR_RS14150 0.71 +0.4
950,722 + BBR_RS14150 0.84 -0.7
950,723 + BBR_RS14150 0.84 +0.2
950,730 + BBR_RS14150 0.85 -0.9
950,738 - BBR_RS14150 0.86 +0.8
950,754 - BBR_RS14150 0.89 -0.3
950,878 + +0.2
950,893 + +0.4
950,944 + +0.4
950,946 + +0.5
950,952 - +0.9
950,952 - +0.3
951,010 - +1.7
951,010 - -0.3
951,093 + BBR_RS14155 0.10 +1.4
951,150 - BBR_RS14155 0.14 -1.1
951,166 + BBR_RS14155 0.15 -0.1
951,174 - BBR_RS14155 0.16 +0.3
951,176 + BBR_RS14155 0.16 +2.1
951,177 + BBR_RS14155 0.16 -0.1
951,222 + BBR_RS14155 0.19 +0.3
951,246 + BBR_RS14155 0.21 -0.4
951,254 - BBR_RS14155 0.21 +0.6
951,308 - BBR_RS14155 0.25 -0.6
951,357 - BBR_RS14155 0.28 +0.5
951,404 + BBR_RS14155 0.31 -0.6
951,451 - BBR_RS14155 0.35 +1.2
951,462 + BBR_RS14155 0.35 -0.5
951,462 + BBR_RS14155 0.35 -0.3
951,481 - BBR_RS14155 0.37 +0.0
951,510 + BBR_RS14155 0.39 +0.4
951,518 - BBR_RS14155 0.39 +0.1
951,621 + BBR_RS14155 0.46 +1.1
951,621 + BBR_RS14155 0.46 +0.6
951,659 - BBR_RS14155 0.49 -0.2
951,678 - BBR_RS14155 0.50 +0.0
951,697 + BBR_RS14155 0.51 -1.1
951,737 + BBR_RS14155 0.54 -0.1
951,751 + BBR_RS14155 0.55 +0.7
951,755 - BBR_RS14155 0.55 +0.4
951,796 - BBR_RS14155 0.58 -0.3
951,827 + BBR_RS14155 0.60 +0.8
951,827 + BBR_RS14155 0.60 +0.8
951,868 + BBR_RS14155 0.63 -0.5
951,872 - BBR_RS14155 0.63 +0.2
951,912 + BBR_RS14155 0.66 -0.8
951,915 + BBR_RS14155 0.66 -0.1
951,992 + BBR_RS14155 0.72 -0.2
951,992 + BBR_RS14155 0.72 -0.4
952,022 - BBR_RS14155 0.74 +0.2
952,065 + BBR_RS14155 0.77 +0.7
952,091 + BBR_RS14155 0.78 +0.7
952,129 - BBR_RS14155 0.81 -0.5
952,160 + BBR_RS14155 0.83 -0.7
952,174 - BBR_RS14155 0.84 -0.3
952,178 + BBR_RS14155 0.84 +0.5
952,178 + BBR_RS14155 0.84 -1.3
952,191 + BBR_RS14155 0.85 +0.6
952,260 + -1.1
952,260 + -0.3
952,269 - -0.1
952,308 + -0.0
952,352 + +0.2
952,537 + BBR_RS14160 0.18 -0.3
952,537 + BBR_RS14160 0.18 +0.4
952,566 + BBR_RS14160 0.25 -0.0
952,572 + BBR_RS14160 0.26 -0.3
952,572 + BBR_RS14160 0.26 -0.2
952,615 + BBR_RS14160 0.37 +0.2
952,640 + BBR_RS14160 0.43 -3.2
952,671 + BBR_RS14160 0.50 -0.2

Or see this region's nucleotide sequence