Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2288

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2287 and Shewana3_2288 are separated by 94 nucleotidesShewana3_2288 and Shewana3_2289 are separated by 86 nucleotides Shewana3_2287: Shewana3_2287 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 2,748,891 to 2,750,123 _2287 Shewana3_2288: Shewana3_2288 - hypothetical protein (RefSeq), at 2,750,218 to 2,750,838 _2288 Shewana3_2289: Shewana3_2289 - transcription-repair coupling factor (RefSeq), at 2,750,925 to 2,754,407 _2289 Position (kb) 2750 2751Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2750.215 kb on + strandat 2750.251 kb on + strandat 2750.278 kb on - strandat 2750.459 kb on + strand, within Shewana3_2288at 2750.464 kb on + strand, within Shewana3_2288at 2750.637 kb on + strand, within Shewana3_2288at 2750.648 kb on + strand, within Shewana3_2288at 2751.014 kb on - strandat 2751.078 kb on - strandat 2751.392 kb on - strand, within Shewana3_2289at 2751.763 kb on - strand, within Shewana3_2289

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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2,750,215 + +1.2
2,750,251 + -3.0
2,750,278 - -0.4
2,750,459 + Shewana3_2288 0.39 +1.2
2,750,464 + Shewana3_2288 0.40 -2.4
2,750,637 + Shewana3_2288 0.67 -0.8
2,750,648 + Shewana3_2288 0.69 +1.2
2,751,014 - +0.2
2,751,078 - +1.2
2,751,392 - Shewana3_2289 0.13 +2.5
2,751,763 - Shewana3_2289 0.24 +3.2

Or see this region's nucleotide sequence