Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1477

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1476 and Shewana3_1477 are separated by 2 nucleotidesShewana3_1477 and Shewana3_1478 are separated by 179 nucleotides Shewana3_1476: Shewana3_1476 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (RefSeq), at 1,716,390 to 1,717,520 _1476 Shewana3_1477: Shewana3_1477 - aspartate semialdehyde dehydrogenase (RefSeq), at 1,717,523 to 1,718,539 _1477 Shewana3_1478: Shewana3_1478 - hypothetical protein (RefSeq), at 1,718,719 to 1,722,066 _1478 Position (kb) 1717 1718 1719Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1717.192 kb on + strand, within Shewana3_1476at 1718.880 kb on + strandat 1719.028 kb on - strandat 1719.028 kb on - strandat 1719.204 kb on + strand, within Shewana3_1478at 1719.212 kb on - strand, within Shewana3_1478at 1719.228 kb on + strand, within Shewana3_1478at 1719.240 kb on + strand, within Shewana3_1478at 1719.338 kb on - strand, within Shewana3_1478at 1719.478 kb on + strand, within Shewana3_1478at 1719.515 kb on - strand, within Shewana3_1478

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
1,717,192 + Shewana3_1476 0.71 -1.8
1,718,880 + -0.9
1,719,028 - +0.2
1,719,028 - -2.1
1,719,204 + Shewana3_1478 0.14 +3.0
1,719,212 - Shewana3_1478 0.15 -2.7
1,719,228 + Shewana3_1478 0.15 -0.6
1,719,240 + Shewana3_1478 0.16 -0.2
1,719,338 - Shewana3_1478 0.18 -0.6
1,719,478 + Shewana3_1478 0.23 -2.4
1,719,515 - Shewana3_1478 0.24 +1.4

Or see this region's nucleotide sequence