Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1195

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1193 and Shewana3_1194 are separated by 221 nucleotidesShewana3_1194 and Shewana3_1195 are separated by 35 nucleotidesShewana3_1195 and Shewana3_1196 are separated by 9 nucleotides Shewana3_1193: Shewana3_1193 - pyrroline-5-carboxylate reductase (RefSeq), at 1,400,185 to 1,401,003 _1193 Shewana3_1194: Shewana3_1194 - hypothetical protein (RefSeq), at 1,401,225 to 1,401,941 _1194 Shewana3_1195: Shewana3_1195 - pilus retraction ATPase PilT (RefSeq), at 1,401,977 to 1,403,014 _1195 Shewana3_1196: Shewana3_1196 - twitching motility protein (RefSeq), at 1,403,024 to 1,404,136 _1196 Position (kb) 1401 1402 1403 1404Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1400.998 kb on + strandat 1401.022 kb on + strandat 1401.022 kb on + strandat 1401.030 kb on - strandat 1401.130 kb on + strandat 1401.250 kb on + strandat 1401.314 kb on - strand, within Shewana3_1194at 1401.605 kb on - strand, within Shewana3_1194at 1401.730 kb on + strand, within Shewana3_1194at 1402.025 kb on + strandat 1402.025 kb on + strandat 1402.115 kb on + strand, within Shewana3_1195at 1402.123 kb on - strand, within Shewana3_1195at 1402.130 kb on - strand, within Shewana3_1195at 1402.135 kb on - strand, within Shewana3_1195at 1402.135 kb on - strand, within Shewana3_1195at 1402.135 kb on - strand, within Shewana3_1195at 1402.142 kb on - strand, within Shewana3_1195at 1402.201 kb on + strand, within Shewana3_1195at 1402.243 kb on - strand, within Shewana3_1195at 1402.527 kb on + strand, within Shewana3_1195at 1402.546 kb on - strand, within Shewana3_1195at 1402.726 kb on - strand, within Shewana3_1195at 1402.915 kb on + strandat 1402.934 kb on + strandat 1402.934 kb on + strandat 1402.941 kb on + strandat 1403.593 kb on - strand, within Shewana3_1196at 1403.689 kb on + strand, within Shewana3_1196at 1403.697 kb on - strand, within Shewana3_1196at 1403.760 kb on + strand, within Shewana3_1196at 1403.971 kb on - strand, within Shewana3_1196

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,400,998 + +1.4
1,401,022 + +2.4
1,401,022 + -0.7
1,401,030 - -0.6
1,401,130 + +1.4
1,401,250 + +2.6
1,401,314 - Shewana3_1194 0.12 -0.8
1,401,605 - Shewana3_1194 0.53 +0.7
1,401,730 + Shewana3_1194 0.70 -0.0
1,402,025 + +2.9
1,402,025 + -0.1
1,402,115 + Shewana3_1195 0.13 -0.8
1,402,123 - Shewana3_1195 0.14 -2.5
1,402,130 - Shewana3_1195 0.15 -1.2
1,402,135 - Shewana3_1195 0.15 -1.6
1,402,135 - Shewana3_1195 0.15 -2.1
1,402,135 - Shewana3_1195 0.15 -1.8
1,402,142 - Shewana3_1195 0.16 -1.4
1,402,201 + Shewana3_1195 0.22 -2.2
1,402,243 - Shewana3_1195 0.26 +0.4
1,402,527 + Shewana3_1195 0.53 -3.1
1,402,546 - Shewana3_1195 0.55 -3.4
1,402,726 - Shewana3_1195 0.72 -0.5
1,402,915 + -2.6
1,402,934 + -1.5
1,402,934 + -2.0
1,402,941 + -1.4
1,403,593 - Shewana3_1196 0.51 +1.4
1,403,689 + Shewana3_1196 0.60 -1.2
1,403,697 - Shewana3_1196 0.60 -1.2
1,403,760 + Shewana3_1196 0.66 -2.2
1,403,971 - Shewana3_1196 0.85 +1.4

Or see this region's nucleotide sequence