Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1193 and Shewana3_1194 are separated by 221 nucleotides Shewana3_1194 and Shewana3_1195 are separated by 35 nucleotides Shewana3_1195 and Shewana3_1196 are separated by 9 nucleotides
Shewana3_1193: Shewana3_1193 - pyrroline-5-carboxylate reductase (RefSeq), at 1,400,185 to 1,401,003
_1193
Shewana3_1194: Shewana3_1194 - hypothetical protein (RefSeq), at 1,401,225 to 1,401,941
_1194
Shewana3_1195: Shewana3_1195 - pilus retraction ATPase PilT (RefSeq), at 1,401,977 to 1,403,014
_1195
Shewana3_1196: Shewana3_1196 - twitching motility protein (RefSeq), at 1,403,024 to 1,404,136
_1196
Position (kb)
1401
1402
1403
1404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1400.998 kb on + strand at 1401.022 kb on + strand at 1401.022 kb on + strand at 1401.030 kb on - strand at 1401.130 kb on + strand at 1401.250 kb on + strand at 1401.314 kb on - strand, within Shewana3_1194 at 1401.605 kb on - strand, within Shewana3_1194 at 1401.730 kb on + strand, within Shewana3_1194 at 1402.025 kb on + strand at 1402.025 kb on + strand at 1402.115 kb on + strand, within Shewana3_1195 at 1402.123 kb on - strand, within Shewana3_1195 at 1402.130 kb on - strand, within Shewana3_1195 at 1402.135 kb on - strand, within Shewana3_1195 at 1402.135 kb on - strand, within Shewana3_1195 at 1402.135 kb on - strand, within Shewana3_1195 at 1402.142 kb on - strand, within Shewana3_1195 at 1402.201 kb on + strand, within Shewana3_1195 at 1402.243 kb on - strand, within Shewana3_1195 at 1402.527 kb on + strand, within Shewana3_1195 at 1402.546 kb on - strand, within Shewana3_1195 at 1402.726 kb on - strand, within Shewana3_1195 at 1402.915 kb on + strand at 1402.934 kb on + strand at 1402.934 kb on + strand at 1402.941 kb on + strand at 1403.593 kb on - strand, within Shewana3_1196 at 1403.689 kb on + strand, within Shewana3_1196 at 1403.697 kb on - strand, within Shewana3_1196 at 1403.760 kb on + strand, within Shewana3_1196 at 1403.971 kb on - strand, within Shewana3_1196
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 1,400,998 + +1.4 1,401,022 + +2.4 1,401,022 + -0.7 1,401,030 - -0.6 1,401,130 + +1.4 1,401,250 + +2.6 1,401,314 - Shewana3_1194 0.12 -0.8 1,401,605 - Shewana3_1194 0.53 +0.7 1,401,730 + Shewana3_1194 0.70 -0.0 1,402,025 + +2.9 1,402,025 + -0.1 1,402,115 + Shewana3_1195 0.13 -0.8 1,402,123 - Shewana3_1195 0.14 -2.5 1,402,130 - Shewana3_1195 0.15 -1.2 1,402,135 - Shewana3_1195 0.15 -1.6 1,402,135 - Shewana3_1195 0.15 -2.1 1,402,135 - Shewana3_1195 0.15 -1.8 1,402,142 - Shewana3_1195 0.16 -1.4 1,402,201 + Shewana3_1195 0.22 -2.2 1,402,243 - Shewana3_1195 0.26 +0.4 1,402,527 + Shewana3_1195 0.53 -3.1 1,402,546 - Shewana3_1195 0.55 -3.4 1,402,726 - Shewana3_1195 0.72 -0.5 1,402,915 + -2.6 1,402,934 + -1.5 1,402,934 + -2.0 1,402,941 + -1.4 1,403,593 - Shewana3_1196 0.51 +1.4 1,403,689 + Shewana3_1196 0.60 -1.2 1,403,697 - Shewana3_1196 0.60 -1.2 1,403,760 + Shewana3_1196 0.66 -2.2 1,403,971 - Shewana3_1196 0.85 +1.4
Or see this region's nucleotide sequence