Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1040

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1039 and Shewana3_1040 are separated by 335 nucleotidesShewana3_1040 and Shewana3_1041 are separated by 414 nucleotides Shewana3_1039: Shewana3_1039 - nucleoside permease (cytidine, inosine, uridine, or thymidine) (from data), at 1,215,141 to 1,216,400 _1039 Shewana3_1040: Shewana3_1040 - nucleoside-specific channel-forming protein, Tsx (RefSeq), at 1,216,736 to 1,217,575 _1040 Shewana3_1041: Shewana3_1041 - deoxyribose-phosphate aldolase (RefSeq), at 1,217,990 to 1,218,760 _1041 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1at 1215.857 kb on - strand, within Shewana3_1039at 1215.882 kb on + strand, within Shewana3_1039at 1215.915 kb on - strand, within Shewana3_1039at 1215.992 kb on - strand, within Shewana3_1039at 1216.343 kb on - strandat 1216.510 kb on + strandat 1216.552 kb on - strandat 1217.132 kb on - strand, within Shewana3_1040at 1217.296 kb on + strand, within Shewana3_1040at 1217.296 kb on + strand, within Shewana3_1040at 1217.527 kb on + strandat 1217.817 kb on + strandat 1217.885 kb on + strandat 1218.029 kb on - strandat 1218.045 kb on + strandat 1218.452 kb on - strand, within Shewana3_1041

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
1,215,857 - Shewana3_1039 0.57 -1.1
1,215,882 + Shewana3_1039 0.59 -0.9
1,215,915 - Shewana3_1039 0.61 +1.4
1,215,992 - Shewana3_1039 0.68 -1.2
1,216,343 - -0.2
1,216,510 + +0.4
1,216,552 - +0.4
1,217,132 - Shewana3_1040 0.47 +1.4
1,217,296 + Shewana3_1040 0.67 -3.3
1,217,296 + Shewana3_1040 0.67 -1.4
1,217,527 + -2.9
1,217,817 + -1.6
1,217,885 + -0.5
1,218,029 - +1.4
1,218,045 + -0.6
1,218,452 - Shewana3_1041 0.60 +1.4

Or see this region's nucleotide sequence