Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0795

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0794 and Shewana3_0795 overlap by 4 nucleotidesShewana3_0795 and Shewana3_0796 are separated by 143 nucleotidesShewana3_0796 and Shewana3_0797 are separated by 62 nucleotides Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501 _0794 Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268 _0795 Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915 _0796 Shewana3_0797: Shewana3_0797 - protease domain-containing protein (RefSeq), at 916,978 to 921,159 _0797 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1 2at 914.561 kb on - strandat 914.711 kb on + strand, within Shewana3_0794at 914.803 kb on - strand, within Shewana3_0794at 914.812 kb on + strand, within Shewana3_0794at 914.813 kb on - strand, within Shewana3_0794at 915.344 kb on + strand, within Shewana3_0794at 915.352 kb on - strand, within Shewana3_0794at 915.352 kb on - strand, within Shewana3_0794at 915.727 kb on - strand, within Shewana3_0795at 915.853 kb on - strand, within Shewana3_0795at 915.910 kb on + strand, within Shewana3_0795at 915.951 kb on - strand, within Shewana3_0795at 915.966 kb on - strand, within Shewana3_0795at 915.966 kb on - strand, within Shewana3_0795at 916.043 kb on - strand, within Shewana3_0795at 916.043 kb on - strand, within Shewana3_0795at 916.099 kb on + strand, within Shewana3_0795at 916.133 kb on + strand, within Shewana3_0795at 916.189 kb on + strand, within Shewana3_0795at 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.247 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.409 kb on + strandat 916.414 kb on + strandat 916.414 kb on + strandat 916.524 kb on - strand, within Shewana3_0796at 916.564 kb on + strand, within Shewana3_0796at 916.564 kb on + strand, within Shewana3_0796at 916.564 kb on + strand, within Shewana3_0796at 916.572 kb on - strand, within Shewana3_0796at 916.572 kb on - strand, within Shewana3_0796at 916.572 kb on - strand, within Shewana3_0796at 916.633 kb on + strand, within Shewana3_0796at 916.641 kb on - strand, within Shewana3_0796at 916.641 kb on - strand, within Shewana3_0796at 916.641 kb on - strandat 916.641 kb on - strand, within Shewana3_0796at 916.853 kb on + strand, within Shewana3_0796at 916.885 kb on - strandat 917.022 kb on - strandat 917.028 kb on + strandat 917.058 kb on + strandat 917.064 kb on + strandat 917.066 kb on - strandat 917.095 kb on - strandat 917.102 kb on + strandat 917.199 kb on - strandat 917.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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914,561 - -1.0
914,711 + Shewana3_0794 0.16 +0.6
914,803 - Shewana3_0794 0.26 -0.1
914,812 + Shewana3_0794 0.27 -1.3
914,813 - Shewana3_0794 0.27 +1.5
915,344 + Shewana3_0794 0.83 +0.3
915,352 - Shewana3_0794 0.84 +1.5
915,352 - Shewana3_0794 0.84 +1.5
915,727 - Shewana3_0795 0.30 +1.5
915,853 - Shewana3_0795 0.46 -0.4
915,910 + Shewana3_0795 0.53 +0.5
915,951 - Shewana3_0795 0.59 +2.1
915,966 - Shewana3_0795 0.61 +1.5
915,966 - Shewana3_0795 0.61 -0.9
916,043 - Shewana3_0795 0.71 +1.5
916,043 - Shewana3_0795 0.71 -0.5
916,099 + Shewana3_0795 0.78 -0.2
916,133 + Shewana3_0795 0.82 +0.8
916,189 + Shewana3_0795 0.90 -1.1
916,222 - +1.5
916,222 - +1.5
916,222 - +1.5
916,222 - +0.5
916,222 - +1.5
916,247 + +0.1
916,249 + +0.1
916,249 + -2.0
916,249 + -0.7
916,249 + +0.0
916,249 + -0.4
916,257 - -1.9
916,257 - -0.3
916,257 - +1.5
916,257 - +1.5
916,409 + -2.4
916,414 + -0.1
916,414 + +1.4
916,524 - Shewana3_0796 0.22 +1.5
916,564 + Shewana3_0796 0.30 -2.1
916,564 + Shewana3_0796 0.30 -0.9
916,564 + Shewana3_0796 0.30 +0.9
916,572 - Shewana3_0796 0.32 -0.5
916,572 - Shewana3_0796 0.32 +0.5
916,572 - Shewana3_0796 0.32 +1.5
916,633 + Shewana3_0796 0.44 -2.6
916,641 - Shewana3_0796 0.45 +1.5
916,641 - Shewana3_0796 0.45 +1.5
916,641 - +1.5
916,641 - Shewana3_0796 0.45 +1.5
916,853 + Shewana3_0796 0.88 -2.1
916,885 - +1.5
917,022 - +0.7
917,028 + +1.5
917,058 + +0.7
917,064 + -0.5
917,066 - -0.6
917,095 - +0.3
917,102 + -0.1
917,199 - +0.7
917,234 - -0.0

Or see this region's nucleotide sequence