Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0718 and Shewana3_0719 are separated by 211 nucleotides Shewana3_0719 and Shewana3_0720 are separated by 145 nucleotides Shewana3_0720 and Shewana3_0721 are separated by 138 nucleotides Shewana3_0721 and Shewana3_0722 are separated by 34 nucleotides
Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492
_0718
Shewana3_0719: Shewana3_0719 - hypothetical protein (RefSeq), at 837,704 to 837,997
_0719
Shewana3_0720: Shewana3_0720 - phage shock protein C, PspC (RefSeq), at 838,143 to 838,343
_0720
Shewana3_0721: Shewana3_0721 - enoyl-CoA hydratase (RefSeq), at 838,482 to 839,219
_0721
Shewana3_0722: Shewana3_0722 - hypothetical protein (RefSeq), at 839,254 to 839,736
_0722
Position (kb) 838
839 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.148 kb on - strand, within Shewana3_0718 at 837.240 kb on + strand, within Shewana3_0718 at 837.307 kb on - strand, within Shewana3_0718 at 837.781 kb on + strand, within Shewana3_0719 at 837.781 kb on + strand, within Shewana3_0719 at 837.794 kb on + strand, within Shewana3_0719 at 837.864 kb on - strand, within Shewana3_0719 at 837.877 kb on + strand, within Shewana3_0719 at 837.877 kb on + strand, within Shewana3_0719 at 837.974 kb on + strand at 837.974 kb on + strand at 837.974 kb on + strand at 837.974 kb on + strand at 837.974 kb on + strand at 837.982 kb on - strand at 838.034 kb on - strand at 838.171 kb on + strand, within Shewana3_0720 at 838.179 kb on - strand, within Shewana3_0720 at 838.242 kb on + strand, within Shewana3_0720 at 838.250 kb on - strand, within Shewana3_0720 at 838.310 kb on - strand, within Shewana3_0720 at 838.435 kb on - strand at 838.467 kb on - strand at 838.477 kb on - strand at 838.563 kb on + strand, within Shewana3_0721 at 838.669 kb on - strand, within Shewana3_0721 at 838.794 kb on + strand, within Shewana3_0721 at 838.796 kb on - strand, within Shewana3_0721 at 838.802 kb on - strand, within Shewana3_0721 at 838.880 kb on - strand, within Shewana3_0721 at 838.890 kb on - strand, within Shewana3_0721 at 838.896 kb on - strand, within Shewana3_0721 at 838.900 kb on - strand, within Shewana3_0721 at 838.905 kb on - strand, within Shewana3_0721 at 839.207 kb on + strand at 839.228 kb on - strand at 839.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 837,148 - Shewana3_0718 0.66 -0.2 837,240 + Shewana3_0718 0.75 -1.1 837,307 - Shewana3_0718 0.81 +0.6 837,781 + Shewana3_0719 0.26 +0.5 837,781 + Shewana3_0719 0.26 -0.0 837,794 + Shewana3_0719 0.31 +1.4 837,864 - Shewana3_0719 0.54 -0.6 837,877 + Shewana3_0719 0.59 -0.3 837,877 + Shewana3_0719 0.59 -1.2 837,974 + -2.1 837,974 + -1.4 837,974 + +2.7 837,974 + +0.0 837,974 + -1.3 837,982 - +0.5 838,034 - -0.5 838,171 + Shewana3_0720 0.14 -1.5 838,179 - Shewana3_0720 0.18 +0.2 838,242 + Shewana3_0720 0.49 +1.1 838,250 - Shewana3_0720 0.53 -0.0 838,310 - Shewana3_0720 0.83 +1.6 838,435 - +1.6 838,467 - -0.3 838,477 - -0.7 838,563 + Shewana3_0721 0.11 +0.2 838,669 - Shewana3_0721 0.25 +0.4 838,794 + Shewana3_0721 0.42 -0.4 838,796 - Shewana3_0721 0.43 -0.4 838,802 - Shewana3_0721 0.43 +1.6 838,880 - Shewana3_0721 0.54 +0.5 838,890 - Shewana3_0721 0.55 +0.2 838,896 - Shewana3_0721 0.56 +0.2 838,900 - Shewana3_0721 0.57 -1.9 838,905 - Shewana3_0721 0.57 -0.9 839,207 + -1.0 839,228 - -1.3 839,267 - +0.3
Or see this region's nucleotide sequence