Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0665 and Shewana3_0666 are separated by 239 nucleotides Shewana3_0666 and Shewana3_0667 are separated by 74 nucleotides
Shewana3_0665: Shewana3_0665 - OmpA/MotB domain-containing protein (RefSeq), at 786,678 to 787,370
_0665
Shewana3_0666: Shewana3_0666 - molybdate ABC transporter periplasmic molybdate-binding protein (RefSeq), at 787,610 to 788,437
_0666
Shewana3_0667: Shewana3_0667 - magnesium transporter (RefSeq), at 788,512 to 789,876
_0667
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.624 kb on + strand at 786.624 kb on + strand at 786.763 kb on + strand, within Shewana3_0665 at 787.063 kb on + strand, within Shewana3_0665 at 787.154 kb on - strand, within Shewana3_0665 at 787.696 kb on + strand, within Shewana3_0666 at 787.707 kb on + strand, within Shewana3_0666 at 787.712 kb on - strand, within Shewana3_0666 at 787.731 kb on + strand, within Shewana3_0666 at 787.888 kb on + strand, within Shewana3_0666 at 787.896 kb on - strand, within Shewana3_0666 at 787.942 kb on + strand, within Shewana3_0666 at 787.970 kb on + strand, within Shewana3_0666 at 787.996 kb on - strand, within Shewana3_0666 at 788.165 kb on - strand, within Shewana3_0666 at 788.190 kb on - strand, within Shewana3_0666 at 788.316 kb on + strand, within Shewana3_0666 at 788.423 kb on - strand at 788.499 kb on + strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.591 kb on - strand at 788.596 kb on - strand at 788.757 kb on + strand, within Shewana3_0667 at 788.895 kb on + strand, within Shewana3_0667 at 788.988 kb on + strand, within Shewana3_0667 at 789.021 kb on - strand, within Shewana3_0667 at 789.025 kb on + strand, within Shewana3_0667 at 789.025 kb on + strand, within Shewana3_0667 at 789.430 kb on + strand, within Shewana3_0667
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 786,624 + -2.8 786,624 + -0.3 786,763 + Shewana3_0665 0.12 +0.1 787,063 + Shewana3_0665 0.56 -0.6 787,154 - Shewana3_0665 0.69 -0.7 787,696 + Shewana3_0666 0.10 -0.9 787,707 + Shewana3_0666 0.12 -1.5 787,712 - Shewana3_0666 0.12 -0.1 787,731 + Shewana3_0666 0.15 -1.8 787,888 + Shewana3_0666 0.34 -0.5 787,896 - Shewana3_0666 0.35 -2.6 787,942 + Shewana3_0666 0.40 -0.8 787,970 + Shewana3_0666 0.43 -1.8 787,996 - Shewana3_0666 0.47 -0.4 788,165 - Shewana3_0666 0.67 +2.2 788,190 - Shewana3_0666 0.70 -1.1 788,316 + Shewana3_0666 0.85 +0.1 788,423 - -1.1 788,499 + +1.6 788,507 - -0.4 788,507 - +0.3 788,507 - -0.5 788,507 - +0.1 788,507 - -0.2 788,507 - +0.6 788,591 - -1.4 788,596 - -1.5 788,757 + Shewana3_0667 0.18 -1.6 788,895 + Shewana3_0667 0.28 -1.0 788,988 + Shewana3_0667 0.35 -0.3 789,021 - Shewana3_0667 0.37 -0.2 789,025 + Shewana3_0667 0.38 -0.4 789,025 + Shewana3_0667 0.38 -1.2 789,430 + Shewana3_0667 0.67 -0.0
Or see this region's nucleotide sequence