Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0557 and Shewana3_0558 are separated by 364 nucleotides Shewana3_0558 and Shewana3_0559 are separated by 54 nucleotides
Shewana3_0557: Shewana3_0557 - methyltransferase type 11 (RefSeq), at 649,989 to 650,774
_0557
Shewana3_0558: Shewana3_0558 - dehydratase (RefSeq), at 651,139 to 652,002
_0558
Shewana3_0559: Shewana3_0559 - aldo/keto reductase (RefSeq), at 652,057 to 652,947
_0559
Position (kb) 651
652
653 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 650.161 kb on - strand, within Shewana3_0557 at 650.263 kb on - strand, within Shewana3_0557 at 650.263 kb on - strand, within Shewana3_0557 at 650.355 kb on - strand, within Shewana3_0557 at 650.577 kb on + strand, within Shewana3_0557 at 650.585 kb on - strand, within Shewana3_0557 at 650.719 kb on + strand at 650.784 kb on - strand at 650.786 kb on + strand at 650.978 kb on + strand at 650.978 kb on + strand at 650.980 kb on - strand at 650.986 kb on - strand at 651.136 kb on + strand at 651.191 kb on - strand at 651.237 kb on - strand, within Shewana3_0558 at 651.240 kb on - strand, within Shewana3_0558 at 651.339 kb on + strand, within Shewana3_0558 at 651.728 kb on + strand, within Shewana3_0558 at 651.767 kb on - strand, within Shewana3_0558 at 651.811 kb on - strand, within Shewana3_0558 at 651.818 kb on + strand, within Shewana3_0558 at 651.940 kb on + strand at 652.004 kb on - strand at 652.062 kb on - strand at 652.110 kb on + strand at 652.260 kb on + strand, within Shewana3_0559 at 652.317 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.360 kb on - strand, within Shewana3_0559 at 652.506 kb on - strand, within Shewana3_0559 at 652.626 kb on + strand, within Shewana3_0559 at 652.668 kb on + strand, within Shewana3_0559 at 652.676 kb on - strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.856 kb on + strand, within Shewana3_0559
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 650,161 - Shewana3_0557 0.22 -0.0 650,263 - Shewana3_0557 0.35 +0.7 650,263 - Shewana3_0557 0.35 -0.7 650,355 - Shewana3_0557 0.47 -0.4 650,577 + Shewana3_0557 0.75 -0.6 650,585 - Shewana3_0557 0.76 -0.8 650,719 + +0.7 650,784 - -0.1 650,786 + +0.1 650,978 + -3.2 650,978 + -0.7 650,980 - -1.5 650,986 - +1.6 651,136 + -3.3 651,191 - +1.6 651,237 - Shewana3_0558 0.11 +0.0 651,240 - Shewana3_0558 0.12 +1.6 651,339 + Shewana3_0558 0.23 -4.9 651,728 + Shewana3_0558 0.68 -2.5 651,767 - Shewana3_0558 0.73 +1.6 651,811 - Shewana3_0558 0.78 +0.0 651,818 + Shewana3_0558 0.79 -2.2 651,940 + -3.1 652,004 - -1.5 652,062 - -1.9 652,110 + -0.1 652,260 + Shewana3_0559 0.23 -1.3 652,317 - Shewana3_0559 0.29 +0.6 652,345 - Shewana3_0559 0.32 -1.1 652,345 - Shewana3_0559 0.32 -1.8 652,360 - Shewana3_0559 0.34 +0.4 652,506 - Shewana3_0559 0.50 -0.1 652,626 + Shewana3_0559 0.64 +0.5 652,668 + Shewana3_0559 0.69 +0.9 652,676 - Shewana3_0559 0.69 -1.1 652,836 + Shewana3_0559 0.87 -2.0 652,836 + Shewana3_0559 0.87 +1.9 652,856 + Shewana3_0559 0.90 -1.8
Or see this region's nucleotide sequence