Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0529 and Shewana3_0530 are separated by 234 nucleotides
Shewana3_0529: Shewana3_0529 - hypothetical protein (RefSeq), at 623,259 to 624,098
_0529
Shewana3_0530: Shewana3_0530 - LysR family transcriptional regulator (RefSeq), at 624,333 to 625,199
_0530
Position (kb) 623
624
625 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 622.630 kb on + strand at 622.631 kb on + strand at 622.631 kb on + strand at 622.631 kb on + strand at 622.631 kb on + strand at 622.638 kb on - strand at 622.639 kb on - strand at 622.639 kb on - strand at 622.639 kb on - strand at 622.639 kb on - strand at 622.658 kb on + strand at 622.666 kb on - strand at 622.666 kb on - strand at 622.668 kb on + strand at 622.682 kb on - strand at 622.687 kb on - strand at 622.693 kb on - strand at 622.699 kb on + strand at 622.700 kb on + strand at 622.700 kb on + strand at 622.723 kb on + strand at 622.745 kb on + strand at 622.745 kb on + strand at 622.745 kb on + strand at 622.745 kb on + strand at 622.745 kb on + strand at 622.745 kb on + strand at 622.745 kb on + strand at 622.753 kb on - strand at 622.753 kb on - strand at 622.753 kb on - strand at 622.753 kb on - strand at 622.753 kb on - strand at 622.753 kb on - strand at 622.753 kb on - strand at 622.805 kb on + strand at 622.822 kb on - strand at 622.822 kb on - strand at 622.832 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.838 kb on + strand at 622.840 kb on + strand at 622.840 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.846 kb on - strand at 622.848 kb on - strand at 622.848 kb on - strand at 622.850 kb on + strand at 622.858 kb on - strand at 622.907 kb on + strand at 622.913 kb on + strand at 622.955 kb on - strand at 622.964 kb on + strand at 622.974 kb on + strand at 622.974 kb on + strand at 622.980 kb on - strand at 622.996 kb on + strand at 622.998 kb on + strand at 623.004 kb on - strand at 623.004 kb on - strand at 623.004 kb on - strand at 623.030 kb on + strand at 623.065 kb on + strand at 623.068 kb on - strand at 623.073 kb on - strand at 623.082 kb on + strand at 623.082 kb on + strand at 623.082 kb on + strand at 623.084 kb on + strand at 623.084 kb on + strand at 623.084 kb on + strand at 623.084 kb on + strand at 623.090 kb on - strand at 623.104 kb on + strand at 623.108 kb on - strand at 623.124 kb on - strand at 623.142 kb on + strand at 623.176 kb on - strand at 623.188 kb on + strand at 623.188 kb on + strand at 623.205 kb on + strand at 623.205 kb on + strand at 623.205 kb on + strand at 623.213 kb on - strand at 623.213 kb on - strand at 623.215 kb on + strand at 623.276 kb on + strand at 623.276 kb on + strand at 623.276 kb on + strand at 623.282 kb on + strand at 623.284 kb on - strand at 623.284 kb on - strand at 623.284 kb on - strand at 623.284 kb on - strand at 623.285 kb on - strand at 623.285 kb on - strand at 623.285 kb on - strand at 623.285 kb on - strand at 623.285 kb on - strand at 623.295 kb on - strand at 623.322 kb on + strand at 623.322 kb on + strand at 623.362 kb on - strand, within Shewana3_0529 at 623.376 kb on + strand, within Shewana3_0529 at 623.376 kb on + strand, within Shewana3_0529 at 623.376 kb on + strand, within Shewana3_0529 at 623.376 kb on + strand, within Shewana3_0529 at 623.384 kb on - strand, within Shewana3_0529 at 623.384 kb on - strand, within Shewana3_0529 at 623.384 kb on - strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.386 kb on + strand, within Shewana3_0529 at 623.394 kb on - strand, within Shewana3_0529 at 623.394 kb on - strand, within Shewana3_0529 at 623.394 kb on - strand, within Shewana3_0529 at 623.394 kb on - strand, within Shewana3_0529 at 623.394 kb on - strand, within Shewana3_0529 at 623.394 kb on - strand, within Shewana3_0529 at 623.397 kb on + strand, within Shewana3_0529 at 623.397 kb on + strand, within Shewana3_0529 at 623.397 kb on + strand, within Shewana3_0529 at 623.405 kb on - strand, within Shewana3_0529 at 623.421 kb on + strand, within Shewana3_0529 at 623.421 kb on + strand, within Shewana3_0529 at 623.421 kb on + strand, within Shewana3_0529 at 623.430 kb on + strand, within Shewana3_0529 at 623.433 kb on + strand, within Shewana3_0529 at 623.468 kb on + strand, within Shewana3_0529 at 623.468 kb on + strand, within Shewana3_0529 at 623.476 kb on - strand, within Shewana3_0529 at 623.476 kb on - strand, within Shewana3_0529 at 623.477 kb on + strand, within Shewana3_0529 at 623.488 kb on - strand, within Shewana3_0529 at 623.491 kb on + strand, within Shewana3_0529 at 623.491 kb on + strand, within Shewana3_0529 at 623.491 kb on + strand, within Shewana3_0529 at 623.499 kb on - strand, within Shewana3_0529 at 623.499 kb on - strand, within Shewana3_0529 at 623.499 kb on - strand, within Shewana3_0529 at 623.499 kb on - strand, within Shewana3_0529 at 623.501 kb on + strand, within Shewana3_0529 at 623.567 kb on + strand, within Shewana3_0529 at 623.567 kb on + strand, within Shewana3_0529 at 623.567 kb on + strand, within Shewana3_0529 at 623.598 kb on - strand, within Shewana3_0529 at 623.659 kb on + strand, within Shewana3_0529 at 623.667 kb on - strand, within Shewana3_0529 at 623.667 kb on - strand, within Shewana3_0529 at 623.669 kb on + strand, within Shewana3_0529 at 623.669 kb on + strand, within Shewana3_0529 at 623.669 kb on + strand, within Shewana3_0529 at 623.669 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.671 kb on + strand, within Shewana3_0529 at 623.677 kb on - strand, within Shewana3_0529 at 623.677 kb on - strand, within Shewana3_0529 at 623.677 kb on - strand, within Shewana3_0529 at 623.677 kb on - strand, within Shewana3_0529 at 623.679 kb on - strand, within Shewana3_0529 at 623.679 kb on - strand, within Shewana3_0529 at 623.679 kb on - strand, within Shewana3_0529 at 623.679 kb on - strand, within Shewana3_0529 at 623.679 kb on - strand, within Shewana3_0529 at 623.679 kb on - strand, within Shewana3_0529 at 623.785 kb on + strand, within Shewana3_0529 at 623.793 kb on - strand, within Shewana3_0529 at 623.799 kb on + strand, within Shewana3_0529 at 623.799 kb on + strand, within Shewana3_0529 at 623.800 kb on - strand, within Shewana3_0529 at 623.807 kb on - strand, within Shewana3_0529 at 623.830 kb on + strand, within Shewana3_0529 at 623.889 kb on + strand, within Shewana3_0529 at 623.890 kb on + strand, within Shewana3_0529 at 623.893 kb on - strand, within Shewana3_0529 at 623.899 kb on + strand, within Shewana3_0529 at 623.899 kb on + strand, within Shewana3_0529 at 623.899 kb on - strand, within Shewana3_0529 at 623.907 kb on - strand, within Shewana3_0529 at 623.907 kb on - strand, within Shewana3_0529 at 623.907 kb on - strand, within Shewana3_0529 at 623.907 kb on - strand, within Shewana3_0529 at 623.921 kb on - strand, within Shewana3_0529 at 624.001 kb on + strand, within Shewana3_0529 at 624.008 kb on + strand, within Shewana3_0529 at 624.010 kb on + strand, within Shewana3_0529 at 624.010 kb on + strand, within Shewana3_0529 at 624.010 kb on + strand, within Shewana3_0529 at 624.010 kb on + strand, within Shewana3_0529 at 624.010 kb on + strand, within Shewana3_0529 at 624.010 kb on + strand, within Shewana3_0529 at 624.018 kb on - strand at 624.018 kb on - strand at 624.018 kb on - strand at 624.018 kb on - strand at 624.102 kb on - strand at 624.116 kb on + strand at 624.168 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.183 kb on + strand at 624.184 kb on + strand at 624.184 kb on + strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.191 kb on - strand at 624.192 kb on - strand at 624.200 kb on + strand at 624.234 kb on + strand at 624.237 kb on - strand at 624.249 kb on + strand at 624.257 kb on - strand at 624.257 kb on - strand at 624.272 kb on - strand at 624.288 kb on - strand at 624.330 kb on + strand at 624.330 kb on + strand at 624.330 kb on + strand at 624.330 kb on + strand at 624.331 kb on + strand at 624.340 kb on + strand at 624.340 kb on + strand at 624.340 kb on + strand at 624.348 kb on - strand at 624.348 kb on - strand at 624.348 kb on - strand at 624.368 kb on + strand at 624.376 kb on - strand at 624.376 kb on - strand at 624.376 kb on - strand at 624.376 kb on - strand at 624.435 kb on + strand, within Shewana3_0530 at 624.659 kb on + strand, within Shewana3_0530 at 624.923 kb on + strand, within Shewana3_0530 at 624.956 kb on + strand, within Shewana3_0530 at 625.034 kb on + strand, within Shewana3_0530 at 625.043 kb on - strand, within Shewana3_0530
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 622,630 + +0.1 622,631 + -0.0 622,631 + -0.1 622,631 + -1.0 622,631 + +0.3 622,638 - -0.7 622,639 - +0.8 622,639 - +0.1 622,639 - +1.6 622,639 - +0.3 622,658 + +0.2 622,666 - +0.6 622,666 - -0.4 622,668 + -1.0 622,682 - -1.4 622,687 - -0.3 622,693 - +1.6 622,699 + -0.8 622,700 + -1.7 622,700 + +0.2 622,723 + -1.2 622,745 + +0.0 622,745 + +0.0 622,745 + -0.9 622,745 + +0.8 622,745 + +0.7 622,745 + -0.3 622,745 + -2.5 622,753 - -0.6 622,753 - +0.0 622,753 - -1.2 622,753 - +0.6 622,753 - +0.6 622,753 - +0.9 622,753 - -1.2 622,805 + +0.7 622,822 - +0.7 622,822 - -0.2 622,832 + -0.4 622,838 + -0.7 622,838 + +0.5 622,838 + -0.1 622,838 + +0.1 622,838 + -0.3 622,838 + -0.8 622,838 + -0.4 622,838 + +0.0 622,838 + +0.5 622,838 + -0.1 622,840 + +0.1 622,840 - +1.6 622,846 - -1.2 622,846 - +1.6 622,846 - +1.6 622,846 - +0.6 622,846 - +1.6 622,846 - +0.1 622,846 - +1.6 622,846 - -0.4 622,848 - +1.6 622,848 - +0.6 622,850 + -0.4 622,858 - +1.6 622,907 + -0.1 622,913 + +0.4 622,955 - +1.5 622,964 + -1.7 622,974 + +0.0 622,974 + -0.2 622,980 - -0.6 622,996 + -0.7 622,998 + -0.1 623,004 - -2.3 623,004 - -0.7 623,004 - -2.1 623,030 + -0.7 623,065 + +0.1 623,068 - -0.0 623,073 - -0.2 623,082 + -1.5 623,082 + -1.5 623,082 + +1.2 623,084 + -2.5 623,084 + -1.4 623,084 + -0.8 623,084 + -0.4 623,090 - -0.7 623,104 + -0.2 623,108 - -0.0 623,124 - +0.3 623,142 + +1.6 623,176 - -1.1 623,188 + +0.1 623,188 + +0.6 623,205 + +0.0 623,205 + +0.1 623,205 + +0.8 623,213 - +0.5 623,213 - -1.0 623,215 + +0.1 623,276 + -0.2 623,276 + -1.2 623,276 + +0.1 623,282 + -0.4 623,284 - -0.7 623,284 - +1.6 623,284 - +0.6 623,284 - +0.6 623,285 - +1.6 623,285 - +1.1 623,285 - -0.2 623,285 - +1.5 623,285 - -0.4 623,295 - +0.6 623,322 + +2.6 623,322 + -0.9 623,362 - Shewana3_0529 0.12 +0.6 623,376 + Shewana3_0529 0.14 +0.3 623,376 + Shewana3_0529 0.14 -0.4 623,376 + Shewana3_0529 0.14 +1.6 623,376 + Shewana3_0529 0.14 -2.5 623,384 - Shewana3_0529 0.15 +0.3 623,384 - Shewana3_0529 0.15 +1.6 623,384 - Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +0.6 623,386 + Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +0.1 623,386 + Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +2.2 623,386 + Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +1.6 623,386 + Shewana3_0529 0.15 +1.6 623,394 - Shewana3_0529 0.16 +1.6 623,394 - Shewana3_0529 0.16 -0.4 623,394 - Shewana3_0529 0.16 +1.6 623,394 - Shewana3_0529 0.16 +1.6 623,394 - Shewana3_0529 0.16 +1.6 623,394 - Shewana3_0529 0.16 +0.1 623,397 + Shewana3_0529 0.16 +1.6 623,397 + Shewana3_0529 0.16 +0.6 623,397 + Shewana3_0529 0.16 +2.4 623,405 - Shewana3_0529 0.17 -1.1 623,421 + Shewana3_0529 0.19 +1.6 623,421 + Shewana3_0529 0.19 +1.6 623,421 + Shewana3_0529 0.19 +1.1 623,430 + Shewana3_0529 0.20 +0.9 623,433 + Shewana3_0529 0.21 +0.1 623,468 + Shewana3_0529 0.25 -0.0 623,468 + Shewana3_0529 0.25 +1.6 623,476 - Shewana3_0529 0.26 +1.6 623,476 - Shewana3_0529 0.26 +0.1 623,477 + Shewana3_0529 0.26 +0.6 623,488 - Shewana3_0529 0.27 -1.0 623,491 + Shewana3_0529 0.28 -0.9 623,491 + Shewana3_0529 0.28 +0.3 623,491 + Shewana3_0529 0.28 +1.6 623,499 - Shewana3_0529 0.29 +1.6 623,499 - Shewana3_0529 0.29 +1.6 623,499 - Shewana3_0529 0.29 +1.6 623,499 - Shewana3_0529 0.29 +0.1 623,501 + Shewana3_0529 0.29 -0.1 623,567 + Shewana3_0529 0.37 +0.5 623,567 + Shewana3_0529 0.37 +1.8 623,567 + Shewana3_0529 0.37 -0.4 623,598 - Shewana3_0529 0.40 -1.8 623,659 + Shewana3_0529 0.48 +1.6 623,667 - Shewana3_0529 0.49 +1.6 623,667 - Shewana3_0529 0.49 +1.6 623,669 + Shewana3_0529 0.49 +0.6 623,669 + Shewana3_0529 0.49 +1.6 623,669 + Shewana3_0529 0.49 +2.4 623,669 + Shewana3_0529 0.49 +1.6 623,671 + Shewana3_0529 0.49 +1.6 623,671 + Shewana3_0529 0.49 +0.2 623,671 + Shewana3_0529 0.49 +0.6 623,671 + Shewana3_0529 0.49 +2.5 623,671 + Shewana3_0529 0.49 +0.6 623,671 + Shewana3_0529 0.49 -0.3 623,671 + Shewana3_0529 0.49 +0.3 623,677 - Shewana3_0529 0.50 +1.3 623,677 - Shewana3_0529 0.50 +0.6 623,677 - Shewana3_0529 0.50 +1.6 623,677 - Shewana3_0529 0.50 +1.6 623,679 - Shewana3_0529 0.50 +1.6 623,679 - Shewana3_0529 0.50 -2.1 623,679 - Shewana3_0529 0.50 -0.4 623,679 - Shewana3_0529 0.50 +1.6 623,679 - Shewana3_0529 0.50 +1.6 623,679 - Shewana3_0529 0.50 +0.6 623,785 + Shewana3_0529 0.63 +0.5 623,793 - Shewana3_0529 0.64 +0.1 623,799 + Shewana3_0529 0.64 -1.2 623,799 + Shewana3_0529 0.64 +1.6 623,800 - Shewana3_0529 0.64 +3.6 623,807 - Shewana3_0529 0.65 +1.6 623,830 + Shewana3_0529 0.68 +0.1 623,889 + Shewana3_0529 0.75 +2.2 623,890 + Shewana3_0529 0.75 -1.7 623,893 - Shewana3_0529 0.75 +0.1 623,899 + Shewana3_0529 0.76 +1.6 623,899 + Shewana3_0529 0.76 -1.4 623,899 - Shewana3_0529 0.76 +1.6 623,907 - Shewana3_0529 0.77 -1.1 623,907 - Shewana3_0529 0.77 -0.3 623,907 - Shewana3_0529 0.77 -0.1 623,907 - Shewana3_0529 0.77 -0.0 623,921 - Shewana3_0529 0.79 +1.4 624,001 + Shewana3_0529 0.88 -0.5 624,008 + Shewana3_0529 0.89 +0.0 624,010 + Shewana3_0529 0.89 +1.2 624,010 + Shewana3_0529 0.89 +3.2 624,010 + Shewana3_0529 0.89 +0.1 624,010 + Shewana3_0529 0.89 -0.9 624,010 + Shewana3_0529 0.89 -0.4 624,010 + Shewana3_0529 0.89 +0.3 624,018 - -1.2 624,018 - +1.6 624,018 - +1.1 624,018 - -1.0 624,102 - -0.0 624,116 + +1.6 624,168 + -1.8 624,183 + -0.8 624,183 + +1.1 624,183 + -0.8 624,183 + +0.3 624,183 + -1.4 624,183 + +3.4 624,183 + -0.7 624,183 + -0.0 624,184 + +0.1 624,184 + -2.8 624,191 - -0.7 624,191 - +1.6 624,191 - +0.6 624,191 - +0.0 624,191 - +1.6 624,191 - -0.2 624,191 - +0.1 624,191 - -0.9 624,191 - +0.1 624,191 - -0.2 624,192 - -0.4 624,200 + +0.4 624,234 + +0.3 624,237 - +0.4 624,249 + -0.7 624,257 - -0.9 624,257 - +1.6 624,272 - -4.1 624,288 - +1.6 624,330 + -0.5 624,330 + -0.8 624,330 + +0.2 624,330 + +0.1 624,331 + +0.6 624,340 + -0.7 624,340 + +1.6 624,340 + -1.8 624,348 - -0.9 624,348 - +0.6 624,348 - -0.4 624,368 + +1.6 624,376 - -0.4 624,376 - +0.6 624,376 - +0.4 624,376 - +1.6 624,435 + Shewana3_0530 0.12 -0.4 624,659 + Shewana3_0530 0.38 +0.6 624,923 + Shewana3_0530 0.68 +0.3 624,956 + Shewana3_0530 0.72 +1.6 625,034 + Shewana3_0530 0.81 -0.4 625,043 - Shewana3_0530 0.82 -0.6
Or see this region's nucleotide sequence