Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0450

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0449 and Shewana3_0450 are separated by 333 nucleotidesShewana3_0450 and Shewana3_0451 are separated by 84 nucleotides Shewana3_0449: Shewana3_0449 - diguanylate cyclase with GAF sensor (RefSeq), at 524,652 to 525,695 _0449 Shewana3_0450: Shewana3_0450 - no description, at 526,029 to 526,265 _0450 Shewana3_0451: Shewana3_0451 - anion transporter (RefSeq), at 526,350 to 527,750 _0451 Position (kb) 526 527Strain fitness (log2 ratio) -2 -1 0 1at 525.085 kb on + strand, within Shewana3_0449at 525.271 kb on + strand, within Shewana3_0449at 525.327 kb on + strand, within Shewana3_0449at 525.368 kb on - strand, within Shewana3_0449at 525.393 kb on + strand, within Shewana3_0449at 525.425 kb on + strand, within Shewana3_0449at 525.516 kb on + strand, within Shewana3_0449at 525.527 kb on + strand, within Shewana3_0449at 525.549 kb on - strand, within Shewana3_0449at 525.657 kb on - strandat 525.668 kb on + strandat 525.705 kb on + strandat 525.712 kb on + strandat 526.090 kb on + strand, within Shewana3_0450at 526.463 kb on + strandat 526.471 kb on - strandat 526.508 kb on - strand, within Shewana3_0451at 526.517 kb on - strand, within Shewana3_0451at 526.542 kb on - strand, within Shewana3_0451at 526.594 kb on + strand, within Shewana3_0451at 526.875 kb on + strand, within Shewana3_0451at 527.201 kb on + strand, within Shewana3_0451

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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525,085 + Shewana3_0449 0.41 -0.4
525,271 + Shewana3_0449 0.59 -0.2
525,327 + Shewana3_0449 0.65 +0.3
525,368 - Shewana3_0449 0.69 -0.6
525,393 + Shewana3_0449 0.71 -1.3
525,425 + Shewana3_0449 0.74 +0.6
525,516 + Shewana3_0449 0.83 +0.0
525,527 + Shewana3_0449 0.84 -0.1
525,549 - Shewana3_0449 0.86 +0.3
525,657 - -1.8
525,668 + -0.6
525,705 + +1.0
525,712 + -0.6
526,090 + Shewana3_0450 0.26 -2.1
526,463 + -1.0
526,471 - -1.7
526,508 - Shewana3_0451 0.11 -1.8
526,517 - Shewana3_0451 0.12 +0.2
526,542 - Shewana3_0451 0.14 -0.2
526,594 + Shewana3_0451 0.17 -2.5
526,875 + Shewana3_0451 0.37 +0.2
527,201 + Shewana3_0451 0.61 +0.2

Or see this region's nucleotide sequence