Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0137 and Shewana3_0138 are separated by 647 nucleotides Shewana3_0138 and Shewana3_0139 are separated by 268 nucleotides
Shewana3_0137: Shewana3_0137 - hypothetical protein (RefSeq), at 156,299 to 157,129
_0137
Shewana3_0138: Shewana3_0138 - putative lipoprotein (RefSeq), at 157,777 to 158,553
_0138
Shewana3_0139: Shewana3_0139 - methyltransferase type 12 (RefSeq), at 158,822 to 159,589
_0139
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 156.851 kb on - strand, within Shewana3_0137 at 156.969 kb on - strand, within Shewana3_0137 at 157.123 kb on + strand at 157.149 kb on + strand at 157.241 kb on + strand at 157.459 kb on + strand at 157.512 kb on + strand at 157.697 kb on - strand at 157.697 kb on - strand at 157.752 kb on + strand at 157.782 kb on - strand at 157.844 kb on + strand at 157.852 kb on - strand at 157.856 kb on + strand, within Shewana3_0138 at 158.153 kb on + strand, within Shewana3_0138 at 158.246 kb on + strand, within Shewana3_0138 at 158.254 kb on - strand, within Shewana3_0138 at 158.254 kb on - strand, within Shewana3_0138 at 158.379 kb on - strand, within Shewana3_0138 at 158.404 kb on + strand, within Shewana3_0138 at 158.430 kb on - strand, within Shewana3_0138 at 158.591 kb on - strand at 158.593 kb on + strand at 158.593 kb on + strand at 158.601 kb on - strand at 159.346 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.413 kb on - strand, within Shewana3_0139 at 159.446 kb on - strand, within Shewana3_0139
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 156,851 - Shewana3_0137 0.66 -0.7 156,969 - Shewana3_0137 0.81 -2.0 157,123 + +0.3 157,149 + -0.6 157,241 + -0.2 157,459 + -4.7 157,512 + -0.9 157,697 - -0.1 157,697 - -1.3 157,752 + -1.9 157,782 - -0.4 157,844 + +1.3 157,852 - -0.4 157,856 + Shewana3_0138 0.10 -1.1 158,153 + Shewana3_0138 0.48 +0.2 158,246 + Shewana3_0138 0.60 -0.5 158,254 - Shewana3_0138 0.61 -0.5 158,254 - Shewana3_0138 0.61 -0.4 158,379 - Shewana3_0138 0.77 -2.3 158,404 + Shewana3_0138 0.81 -4.4 158,430 - Shewana3_0138 0.84 -0.9 158,591 - +0.5 158,593 + -2.4 158,593 + +0.1 158,601 - +0.4 159,346 + Shewana3_0139 0.68 -0.1 159,380 + Shewana3_0139 0.73 -0.1 159,380 + Shewana3_0139 0.73 -0.0 159,413 - Shewana3_0139 0.77 +0.0 159,446 - Shewana3_0139 0.81 -0.8
Or see this region's nucleotide sequence