Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1623

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
1,691,266	-				+0.2
1,691,280	+		Synpcc7942_1622	0.63	+0.6
1,691,315	-		Synpcc7942_1622	0.64	-0.8
1,691,364	-		Synpcc7942_1622	0.66	+1.0
1,691,444	+		Synpcc7942_1622	0.70	-0.4
1,691,455	+		Synpcc7942_1622	0.70	+1.2
1,691,498	+		Synpcc7942_1622	0.72	+0.2
1,691,581	-		Synpcc7942_1622	0.75	-0.2
1,691,637	-		Synpcc7942_1622	0.78	-0.2
1,691,655	+		Synpcc7942_1622	0.78	-0.1
1,691,675	+		Synpcc7942_1622	0.79	-1.0
1,691,675	+		Synpcc7942_1622	0.79	-0.4
1,691,675	+		Synpcc7942_1622	0.79	+0.2
1,691,675	+		Synpcc7942_1622	0.79	+1.5
1,691,678	-		Synpcc7942_1622	0.79	-1.8
1,691,688	-		Synpcc7942_1622	0.80	+1.3
1,691,693	-		Synpcc7942_1622	0.80	-0.3
1,691,697	-		Synpcc7942_1622	0.80	-0.4
1,691,698	-		Synpcc7942_1622	0.80	+0.9
1,691,726	-		Synpcc7942_1622	0.81	+1.2
1,691,731	-		Synpcc7942_1622	0.81	-0.5
1,691,734	-		Synpcc7942_1622	0.81	+0.7
1,691,736	+		Synpcc7942_1622	0.82	+0.2
1,691,790	+		Synpcc7942_1622	0.84	-0.2
1,691,816	+		Synpcc7942_1622	0.85	+0.3
1,691,817	-		Synpcc7942_1622	0.85	-0.7
1,691,835	+		Synpcc7942_1622	0.86	-0.3
1,691,843	-		Synpcc7942_1622	0.86	-1.1
1,691,843	-				-1.4
1,691,845	+		Synpcc7942_1622	0.86	+2.2
1,691,846	+		Synpcc7942_1622	0.86	+0.4
1,691,873	+		Synpcc7942_1622	0.87	+0.2
1,691,884	-		Synpcc7942_1622	0.88	-0.1
1,691,912	+		Synpcc7942_1622	0.89	+2.2
1,691,923	+		Synpcc7942_1622	0.89	-1.8
1,691,931	-		Synpcc7942_1622	0.89	+1.5
1,691,966	-				-0.4
1,692,038	+				-0.4
1,692,050	+				-0.4
1,692,062	+				+2.7
1,692,062	+				-1.4
1,692,069	+				-1.0
1,692,100	+				+0.5
1,692,100	+				-0.3
1,692,108	-				+1.6
1,692,120	+				+1.5
1,692,121	-				-1.4
1,692,128	-				+0.2
1,692,140	-				+1.4
1,692,175	-				-0.3
1,692,178	+				-1.8
1,692,216	-				-0.2
1,692,230	-				-0.2
1,692,245	-				+0.6
1,692,256	+				-1.0
1,692,269	-				+1.8
1,692,320	-				+0.9
1,692,344	+		Synpcc7942_1623	0.11	+0.4
1,692,360	+		Synpcc7942_1623	0.14	+1.4
1,692,360	+		Synpcc7942_1623	0.14	+0.2
1,692,377	+		Synpcc7942_1623	0.16	+0.5
1,692,377	+				-0.2
1,692,385	-		Synpcc7942_1623	0.17	-1.4
1,692,385	-		Synpcc7942_1623	0.17	-0.8
1,692,392	+		Synpcc7942_1623	0.18	+0.2
1,692,412	-		Synpcc7942_1623	0.21	-0.8
1,692,481	+		Synpcc7942_1623	0.31	-0.8
1,692,509	-		Synpcc7942_1623	0.35	-0.8
1,692,511	+		Synpcc7942_1623	0.35	-1.3
1,692,511	+		Synpcc7942_1623	0.35	+3.0
1,692,511	+		Synpcc7942_1623	0.35	-0.8
1,692,511	+		Synpcc7942_1623	0.35	+0.2
1,692,511	+		Synpcc7942_1623	0.35	+0.5
1,692,511	+		Synpcc7942_1623	0.35	-1.0
1,692,518	-		Synpcc7942_1623	0.37	+1.7
1,692,519	-		Synpcc7942_1623	0.37	+2.0
1,692,519	-		Synpcc7942_1623	0.37	+0.6
1,692,519	-		Synpcc7942_1623	0.37	-1.4
1,692,519	-		Synpcc7942_1623	0.37	+0.6
1,692,519	-		Synpcc7942_1623	0.37	+0.2
1,692,535	-		Synpcc7942_1623	0.39	-2.7
1,692,591	-		Synpcc7942_1623	0.47	+1.4
1,692,598	+		Synpcc7942_1623	0.48	+0.4
1,692,644	-		Synpcc7942_1623	0.55	+1.6
1,692,695	-		Synpcc7942_1623	0.62	-0.5
1,692,757	+		Synpcc7942_1623	0.71	-0.8
1,692,776	+		Synpcc7942_1623	0.74	+1.6
1,692,777	-		Synpcc7942_1623	0.74	+0.6
1,692,801	-		Synpcc7942_1623	0.77	-1.4
1,692,830	+		Synpcc7942_1623	0.82	+0.7
1,692,859	-		Synpcc7942_1623	0.86	-1.8
1,692,861	+		Synpcc7942_1623	0.86	+2.2
1,692,871	+		Synpcc7942_1623	0.87	+1.7
1,692,871	-		Synpcc7942_1623	0.87	+1.5
1,692,878	+		Synpcc7942_1623	0.88	-1.6
1,692,879	-		Synpcc7942_1623	0.89	+1.7
1,692,884	-		Synpcc7942_1623	0.89	+1.8
1,692,886	-		Synpcc7942_1623	0.90	+0.4
1,692,886	-		Synpcc7942_1623	0.90	+2.0
1,692,901	-				+3.0
1,692,937	+				+0.4
1,692,952	+				-0.1
1,692,955	-				+1.4
1,692,958	+				+2.7
1,692,977	+				-0.3
1,692,982	+				+0.2
1,693,653	-				-1.6
1,693,660	+				-0.0
1,693,660	+				-0.8
1,693,686	+				+1.7
1,693,686	+				+1.8
1,693,686	+				-0.8
1,693,694	-				+3.2
1,693,702	-				-0.1
1,693,792	+				+1.8
1,693,792	+				-0.8
1,693,800	-				-0.5
1,693,800	-				-1.4
1,693,832	-		Synpcc7942_1625	0.11	-1.4
1,693,847	-		Synpcc7942_1625	0.12	-0.1
1,693,887	-		Synpcc7942_1625	0.15	-0.1
1,693,888	+		Synpcc7942_1625	0.16	-0.7
1,693,921	-		Synpcc7942_1625	0.18	+1.4
1,693,921	-		Synpcc7942_1625	0.18	+1.1
1,693,938	+		Synpcc7942_1625	0.20	-1.7
1,693,944	+		Synpcc7942_1625	0.20	-1.4