Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1542

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
1,598,358	-	isiC	Synpcc7942_1540	0.71	+0.3
1,598,408	+	isiC	Synpcc7942_1540	0.78	+0.7
1,598,418	+	isiC	Synpcc7942_1540	0.79	-0.2
1,598,446	+	isiC	Synpcc7942_1540	0.83	-2.6
1,598,513	+				-0.6
1,598,521	-				+0.5
1,598,535	-				+0.9
1,598,537	+				+0.6
1,598,545	-				+1.6
1,598,545	-				-2.6
1,598,555	-				+0.1
1,598,562	+				-0.1
1,598,608	+				-2.4
1,598,608	+				+1.3
1,598,616	-				-0.5
1,598,620	+				+0.2
1,598,620	+				-1.3
1,598,626	-				+0.2
1,598,654	+				+1.3
1,598,779	-	isiB	Synpcc7942_1541	0.24	-1.4
1,598,794	+	isiB	Synpcc7942_1541	0.27	+2.0
1,598,973	-	isiB	Synpcc7942_1541	0.62	-0.2
1,598,982	-	isiB	Synpcc7942_1541	0.64	-0.2
1,599,070	-	isiB	Synpcc7942_1541	0.81	+0.7
1,599,170	+				+1.5
1,599,215	+				+0.4
1,599,215	+				-0.3
1,599,215	+				+0.6
1,599,223	-				-0.3
1,599,223	-				+0.3
1,599,223	-				+2.8
1,599,359	-				+1.9
1,599,369	-				+3.1
1,599,369	-				+2.2
1,599,409	+				+0.6
1,599,451	-				-0.2
1,599,478	-	isiA	Synpcc7942_1542	0.12	+1.2
1,599,487	+	isiA	Synpcc7942_1542	0.13	-1.7
1,599,488	-	isiA	Synpcc7942_1542	0.13	-1.4
1,599,522	+	isiA	Synpcc7942_1542	0.16	+1.5
1,599,542	-	isiA	Synpcc7942_1542	0.18	-1.6
1,599,569	+	isiA	Synpcc7942_1542	0.21	+0.7
1,599,583	+	isiA	Synpcc7942_1542	0.22	-0.8
1,599,583	+	isiA	Synpcc7942_1542	0.22	+1.2
1,599,583	+	isiA	Synpcc7942_1542	0.22	+2.0
1,599,583	+	isiA	Synpcc7942_1542	0.22	-2.4
1,599,583	+	isiA	Synpcc7942_1542	0.22	-0.8
1,599,583	+	isiA	Synpcc7942_1542	0.22	+1.5
1,599,589	-	isiA	Synpcc7942_1542	0.23	+1.4
1,599,590	+	isiA	Synpcc7942_1542	0.23	+1.0
1,599,590	+	isiA	Synpcc7942_1542	0.23	+2.0
1,599,605	+	isiA	Synpcc7942_1542	0.24	-0.3
1,599,605	+	isiA	Synpcc7942_1542	0.24	+0.5
1,599,605	+	isiA	Synpcc7942_1542	0.24	+1.7
1,599,613	-	isiA	Synpcc7942_1542	0.25	-1.4
1,599,613	-	isiA	Synpcc7942_1542	0.25	+0.5
1,599,639	-	isiA	Synpcc7942_1542	0.28	+2.1
1,599,648	-	isiA	Synpcc7942_1542	0.29	+3.6
1,599,648	-	isiA	Synpcc7942_1542	0.29	+1.6
1,599,677	+	isiA	Synpcc7942_1542	0.31	-0.4
1,599,719	-	isiA	Synpcc7942_1542	0.36	+1.4
1,599,778	-	isiA	Synpcc7942_1542	0.41	-1.2
1,599,816	+	isiA	Synpcc7942_1542	0.45	+2.0
1,599,852	+	isiA	Synpcc7942_1542	0.48	+0.4
1,599,879	+	isiA	Synpcc7942_1542	0.51	+1.3
1,599,884	-	isiA	Synpcc7942_1542	0.52	+2.2
1,599,887	-	isiA	Synpcc7942_1542	0.52	+1.3
1,599,889	-	isiA	Synpcc7942_1542	0.52	+0.7
1,599,914	-	isiA	Synpcc7942_1542	0.55	+1.2
1,599,924	+	isiA	Synpcc7942_1542	0.55	+0.7
1,599,925	+	isiA	Synpcc7942_1542	0.56	-1.8
1,599,966	-	isiA	Synpcc7942_1542	0.60	+1.9
1,599,993	+	isiA	Synpcc7942_1542	0.62	+0.7
1,600,042	+	isiA	Synpcc7942_1542	0.67	-1.4
1,600,042	+	isiA	Synpcc7942_1542	0.67	+2.0
1,600,050	+	isiA	Synpcc7942_1542	0.68	+2.8
1,600,050	-	isiA	Synpcc7942_1542	0.68	+1.0
1,600,058	-				+3.0
1,600,060	-	isiA	Synpcc7942_1542	0.69	+2.4
1,600,078	-	isiA	Synpcc7942_1542	0.70	-1.2
1,600,088	+	isiA	Synpcc7942_1542	0.71	-1.8
1,600,093	+	isiA	Synpcc7942_1542	0.72	+0.2
1,600,093	+	isiA	Synpcc7942_1542	0.72	+1.3
1,600,093	+	isiA	Synpcc7942_1542	0.72	+1.4
1,600,123	-	isiA	Synpcc7942_1542	0.75	+0.4
1,600,128	+	isiA	Synpcc7942_1542	0.75	+0.3
1,600,136	-	isiA	Synpcc7942_1542	0.76	+0.6
1,600,148	+	isiA	Synpcc7942_1542	0.77	+1.2
1,600,153	+	isiA	Synpcc7942_1542	0.78	+0.2
1,600,156	-	isiA	Synpcc7942_1542	0.78	+0.7
1,600,159	+	isiA	Synpcc7942_1542	0.78	+1.3
1,600,159	+	isiA	Synpcc7942_1542	0.78	+3.6
1,600,193	+	isiA	Synpcc7942_1542	0.82	+2.0
1,600,194	-	isiA	Synpcc7942_1542	0.82	+0.4
1,600,194	-	isiA	Synpcc7942_1542	0.82	-0.3
1,600,195	-	isiA	Synpcc7942_1542	0.82	+1.4
1,600,203	+	isiA	Synpcc7942_1542	0.83	+0.5
1,600,203	+	isiA	Synpcc7942_1542	0.83	+0.9
1,600,203	+	isiA	Synpcc7942_1542	0.83	+1.6
1,600,203	+	isiA	Synpcc7942_1542	0.83	+0.2
1,600,203	+	isiA	Synpcc7942_1542	0.83	+2.5
1,600,203	+	isiA	Synpcc7942_1542	0.83	-1.8
1,600,203	+	isiA	Synpcc7942_1542	0.83	+1.2
1,600,203	+	isiA	Synpcc7942_1542	0.83	+0.4
1,600,208	+	isiA	Synpcc7942_1542	0.83	+0.2
1,600,211	-	isiA	Synpcc7942_1542	0.83	-1.2
1,600,211	-	isiA	Synpcc7942_1542	0.83	+2.2
1,600,211	-	isiA	Synpcc7942_1542	0.83	+1.8
1,600,211	-	isiA	Synpcc7942_1542	0.83	+2.1
1,600,211	-	isiA	Synpcc7942_1542	0.83	+0.7
1,600,211	-	isiA	Synpcc7942_1542	0.83	+0.4
1,600,211	-	isiA	Synpcc7942_1542	0.83	+4.4
1,600,211	-	isiA	Synpcc7942_1542	0.83	-2.4
1,600,213	+	isiA	Synpcc7942_1542	0.84	+0.2
1,600,213	+	isiA	Synpcc7942_1542	0.84	+0.2
1,600,221	-	isiA	Synpcc7942_1542	0.84	-0.1
1,600,221	-	isiA	Synpcc7942_1542	0.84	+1.7
1,600,244	+	isiA	Synpcc7942_1542	0.87	-0.2
1,600,273	+	isiA	Synpcc7942_1542	0.89	+2.0
1,600,278	+	isiA	Synpcc7942_1542	0.90	+1.8
1,600,281	-				+1.2
1,600,286	-				+0.3
1,600,308	+				-0.4
1,600,341	-				+1.0
1,600,356	+				-0.3
1,600,357	+				+0.2
1,600,357	+				+1.6
1,600,357	+				+0.9
1,600,365	-				+0.5
1,600,365	-				+3.3
1,600,367	+				+0.2
1,600,367	+				+0.5
1,600,367	+				+2.4
1,600,367	+				+1.2
1,600,368	+				-0.6
1,600,375	-				-1.8
1,600,376	-				+1.2
1,600,378	+				+0.4
1,600,378	+				+2.3
1,600,386	-				+0.2
1,600,386	-				+0.4
1,600,386	-				+0.9
1,600,519	-				+1.7
1,600,527	-				+2.8
1,600,571	+				+0.2
1,600,591	+				+2.8
1,600,591	+				+0.5
1,600,609	+				+1.0
1,600,613	-				+3.3
1,600,617	+				+0.2
1,600,627	+				-3.6
1,600,669	-		Synpcc7942_1543	0.13	+0.3
1,600,678	+		Synpcc7942_1543	0.21	-1.3
1,600,686	+		Synpcc7942_1543	0.27	+1.8
1,600,713	-		Synpcc7942_1543	0.48	-1.4
1,600,713	-		Synpcc7942_1543	0.48	+1.4
1,600,713	-		Synpcc7942_1543	0.48	+2.3
1,600,841	-		Synpcc7942_1544	0.15	+0.2
1,600,847	+		Synpcc7942_1544	0.18	-0.7
1,600,881	+		Synpcc7942_1544	0.31	-0.0
1,600,889	-		Synpcc7942_1544	0.35	-2.4
1,600,889	-		Synpcc7942_1544	0.35	-1.3
1,600,923	+		Synpcc7942_1544	0.48	-3.0
1,601,010	+		Synpcc7942_1544	0.83	+1.4
1,601,010	+		Synpcc7942_1544	0.83	+2.6
1,601,018	-				+0.2
1,601,099	-				+1.5
1,601,109	-		Synpcc7942_1545	0.12	+1.0
1,601,116	+		Synpcc7942_1545	0.13	-1.4
1,601,116	+		Synpcc7942_1545	0.13	-1.4
1,601,116	+		Synpcc7942_1545	0.13	+0.4
1,601,116	+		Synpcc7942_1545	0.13	+0.1
1,601,124	-		Synpcc7942_1545	0.15	-1.3
1,601,124	-		Synpcc7942_1545	0.15	+0.6
1,601,160	-		Synpcc7942_1545	0.23	+0.3
1,601,162	+		Synpcc7942_1545	0.23	-0.3
1,601,171	+		Synpcc7942_1545	0.25	+1.3
1,601,192	+		Synpcc7942_1545	0.30	+0.9
1,601,205	+		Synpcc7942_1545	0.33	+0.3
1,601,217	+		Synpcc7942_1545	0.35	-0.3
1,601,250	-		Synpcc7942_1545	0.43	+0.2
1,601,310	-		Synpcc7942_1545	0.56	-1.4
1,601,315	-		Synpcc7942_1545	0.57	+0.3