Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1252

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
1,275,466	+				+0.2
1,275,482	+				-1.2
1,275,488	-				+0.8
1,275,490	+				+0.4
1,275,492	+				+1.3
1,275,499	-				+0.2
1,275,500	-				-0.8
1,275,500	-				-0.6
1,275,500	-				-2.4
1,275,505	-				-0.8
1,275,507	+				+0.3
1,275,524	+				+0.7
1,275,530	-				-1.7
1,275,643	+				+0.2
1,275,683	-				-3.6
1,275,760	+		Synpcc7942_1252	0.16	-1.4
1,275,761	+		Synpcc7942_1252	0.16	-3.4
1,275,762	+		Synpcc7942_1252	0.16	+0.2
1,275,768	-		Synpcc7942_1252	0.17	-2.6
1,275,781	+		Synpcc7942_1252	0.18	-3.7
1,275,789	-		Synpcc7942_1252	0.18	-1.2
1,275,833	-		Synpcc7942_1252	0.22	-0.8
1,275,833	-		Synpcc7942_1252	0.22	+0.2
1,275,833	-		Synpcc7942_1252	0.22	-1.4
1,275,852	+		Synpcc7942_1252	0.23	-1.4
1,275,929	-		Synpcc7942_1252	0.29	-3.0
1,275,970	-		Synpcc7942_1252	0.32	-3.1
1,275,980	-		Synpcc7942_1252	0.33	-0.8
1,276,070	+		Synpcc7942_1252	0.40	-3.1
1,276,070	+		Synpcc7942_1252	0.40	-2.6
1,276,070	+		Synpcc7942_1252	0.40	-3.0
1,276,070	+		Synpcc7942_1252	0.40	-0.8
1,276,070	+		Synpcc7942_1252	0.40	-1.8
1,276,070	+		Synpcc7942_1252	0.40	-0.8
1,276,078	-		Synpcc7942_1252	0.41	-1.8
1,276,078	-		Synpcc7942_1252	0.41	-2.2
1,276,078	-		Synpcc7942_1252	0.41	-3.4
1,276,078	-		Synpcc7942_1252	0.41	-2.1
1,276,078	-		Synpcc7942_1252	0.41	-0.7
1,276,078	-		Synpcc7942_1252	0.41	-3.3
1,276,124	+		Synpcc7942_1252	0.44	-1.4
1,276,135	+		Synpcc7942_1252	0.45	-2.1
1,276,158	-		Synpcc7942_1252	0.47	-1.4
1,276,169	+		Synpcc7942_1252	0.48	-1.8
1,276,179	+		Synpcc7942_1252	0.49	-3.6
1,276,204	-		Synpcc7942_1252	0.51	-0.8
1,276,273	+		Synpcc7942_1252	0.56	-2.4
1,276,281	-		Synpcc7942_1252	0.57	-4.7
1,276,295	-		Synpcc7942_1252	0.58	-2.4
1,276,299	+		Synpcc7942_1252	0.58	-1.8
1,276,311	+		Synpcc7942_1252	0.59	-3.0
1,276,321	+		Synpcc7942_1252	0.60	-1.7
1,276,321	+		Synpcc7942_1252	0.60	+0.2
1,276,321	+		Synpcc7942_1252	0.60	-2.8
1,276,329	-		Synpcc7942_1252	0.60	+0.2
1,276,367	+		Synpcc7942_1252	0.63	-4.1
1,276,484	+		Synpcc7942_1252	0.73	+0.2
1,276,583	+		Synpcc7942_1252	0.80	-1.4
1,276,593	+		Synpcc7942_1252	0.81	+0.2
1,276,601	-		Synpcc7942_1252	0.82	-1.8
1,276,650	-		Synpcc7942_1252	0.86	-1.4
1,276,652	+		Synpcc7942_1252	0.86	-0.8
1,276,652	+		Synpcc7942_1252	0.86	-4.2
1,276,652	+		Synpcc7942_1252	0.86	-2.6
1,276,652	+		Synpcc7942_1252	0.86	-0.8
1,276,660	-		Synpcc7942_1252	0.86	-2.8
1,276,660	-		Synpcc7942_1252	0.86	-1.8
1,276,660	-		Synpcc7942_1252	0.86	-1.8
1,276,704	+		Synpcc7942_1252	0.90	-1.4
1,276,704	+		Synpcc7942_1252	0.90	+0.2
1,276,706	-				-4.6
1,276,712	-				-1.5
1,276,712	-				-1.8
1,276,712	-				+3.9
1,276,717	-				-0.8
1,276,728	+				+0.2
1,276,728	+				-0.8
1,276,736	-				-2.4
1,276,736	-				-2.8
1,276,741	-				-2.1
1,276,758	-				-1.4
1,276,772	-				-3.0
1,276,788	-				-1.6
1,276,789	-				-2.1
1,276,902	-				+0.2
1,276,974	+		Synpcc7942_1253	0.12	+1.4
1,276,985	+		Synpcc7942_1253	0.16	-0.1
1,277,010	+		Synpcc7942_1253	0.25	+0.1
1,277,010	+		Synpcc7942_1253	0.25	-1.4
1,277,018	-		Synpcc7942_1253	0.28	-0.1
1,277,018	-		Synpcc7942_1253	0.28	-2.1
1,277,023	-		Synpcc7942_1253	0.29	-0.0
1,277,025	+		Synpcc7942_1253	0.30	-3.3
1,277,038	-		Synpcc7942_1253	0.35	-2.8
1,277,065	-		Synpcc7942_1253	0.44	-0.5
1,277,088	+		Synpcc7942_1253	0.52	-2.3
1,277,137	+		Synpcc7942_1253	0.70	-2.4
1,277,145	-		Synpcc7942_1253	0.73	-0.6
1,277,145	-		Synpcc7942_1253	0.73	-1.4
1,277,176	-		Synpcc7942_1253	0.84	-0.8
1,277,181	+		Synpcc7942_1253	0.85	-0.8
1,277,193	-				-0.3
1,277,210	+				+1.0
1,277,215	+				-2.4
1,277,233	+				+1.3
1,277,242	-				+1.3
1,277,242	-				-0.4
1,277,244	+				+2.6
1,277,276	-				+1.2
1,277,297	+				-0.4
1,277,332	-				+1.0
1,277,346	+				+0.3
1,277,354	-				-1.4
1,277,354	-				-1.8
1,277,354	-				-0.4
1,277,354	-				-1.4
1,277,360	-				+1.2
1,277,365	+				+0.8
1,277,366	-				+0.2
1,277,372	-				-2.1
1,277,373	-				-1.1
1,277,374	+				-3.7
1,277,420	-				-0.2
1,277,424	+				+1.2
1,277,441	+				-0.6
1,277,444	+				+1.1
1,277,447	-				-0.9
1,277,452	-				-0.8
1,277,455	+				-2.1
1,277,464	-				+0.2
1,277,467	+				-0.3
1,277,468	+				+1.2
1,277,534	+		Synpcc7942_1254	0.19	-2.8
1,277,552	+		Synpcc7942_1254	0.23	+0.4
1,277,593	+		Synpcc7942_1254	0.34	-1.8
1,277,599	+				+0.2
1,277,599	+				+0.2
1,277,630	+		Synpcc7942_1254	0.43	-1.2
1,277,767	-		Synpcc7942_1254	0.78	-2.1