Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1214

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
1,236,023	-		Synpcc7942_1212	0.74	+1.4
1,236,023	-		Synpcc7942_1212	0.74	-1.6
1,236,023	-		Synpcc7942_1212	0.74	-1.5
1,236,070	+				-1.6
1,236,154	+				-0.1
1,236,186	+				+0.5
1,236,187	-				-0.3
1,236,194	+				-2.4
1,236,231	+				-2.4
1,236,238	+				-2.1
1,236,246	-				-0.8
1,236,287	+				+0.4
1,236,306	+				-0.6
1,236,322	+				-1.6
1,236,359	+				+2.0
1,236,369	+				-1.4
1,236,377	-				-1.8
1,236,390	+				+0.4
1,236,398	-				-2.1
1,236,408	-				-1.8
1,236,414	+				-1.4
1,236,429	+				-1.8
1,236,432	-				+1.4
1,236,432	-				+1.6
1,236,432	-				-1.4
1,236,432	-				+0.2
1,236,438	+				-2.5
1,236,438	+				+3.3
1,236,446	-				-3.4
1,236,472	-				-0.2
1,236,483	+				+1.9
1,236,561	+		Synpcc7942_1213	0.22	-0.5
1,236,569	-		Synpcc7942_1213	0.24	-3.4
1,236,579	-		Synpcc7942_1213	0.26	+1.7
1,236,579	-		Synpcc7942_1213	0.26	+0.6
1,236,585	+		Synpcc7942_1213	0.28	+2.2
1,236,593	-		Synpcc7942_1213	0.29	+0.5
1,236,593	-		Synpcc7942_1213	0.29	+1.8
1,236,595	+		Synpcc7942_1213	0.30	-0.1
1,236,603	-		Synpcc7942_1213	0.32	+1.1
1,236,603	-		Synpcc7942_1213	0.32	+0.6
1,236,603	-		Synpcc7942_1213	0.32	+0.5
1,236,611	-		Synpcc7942_1213	0.34	+0.6
1,236,614	+		Synpcc7942_1213	0.35	+0.4
1,236,632	+		Synpcc7942_1213	0.39	+1.9
1,236,641	-		Synpcc7942_1213	0.41	+0.2
1,236,641	-		Synpcc7942_1213	0.41	-0.5
1,236,683	+		Synpcc7942_1213	0.51	+2.1
1,236,707	+		Synpcc7942_1213	0.57	+0.7
1,236,839	+		Synpcc7942_1213	0.88	+0.8
1,236,840	-		Synpcc7942_1213	0.89	+1.5
1,236,847	-				+1.5
1,236,855	+				+1.2
1,236,865	+				+1.0
1,236,865	+				-1.8
1,236,870	+				-1.5
1,236,899	+				-1.6
1,236,943	+				+0.0
1,236,987	-				-0.8
1,236,987	-				+0.7
1,237,049	+				-3.1
1,237,052	-				+0.3
1,237,079	-	gpx1	Synpcc7942_1214	0.12	-0.1
1,237,110	+	gpx1	Synpcc7942_1214	0.18	-1.3
1,237,145	-	gpx1	Synpcc7942_1214	0.25	-4.0
1,237,145	-	gpx1	Synpcc7942_1214	0.25	-0.8
1,237,147	-	gpx1	Synpcc7942_1214	0.26	+0.8
1,237,156	-	gpx1	Synpcc7942_1214	0.28	+2.1
1,237,156	-	gpx1	Synpcc7942_1214	0.28	+1.8
1,237,166	-	gpx1	Synpcc7942_1214	0.30	-1.4
1,237,171	-	gpx1	Synpcc7942_1214	0.31	+1.1
1,237,179	-	gpx1	Synpcc7942_1214	0.32	+2.0
1,237,179	-	gpx1	Synpcc7942_1214	0.32	+0.9
1,237,188	+	gpx1	Synpcc7942_1214	0.34	-1.4
1,237,214	+	gpx1	Synpcc7942_1214	0.39	-0.5
1,237,223	-	gpx1	Synpcc7942_1214	0.41	-0.8
1,237,223	-	gpx1	Synpcc7942_1214	0.41	+1.8
1,237,239	-	gpx1	Synpcc7942_1214	0.44	-0.2
1,237,246	-	gpx1	Synpcc7942_1214	0.45	-0.2
1,237,261	+	gpx1	Synpcc7942_1214	0.48	+0.7
1,237,261	+	gpx1	Synpcc7942_1214	0.48	-1.8
1,237,261	+	gpx1	Synpcc7942_1214	0.48	-2.1
1,237,261	+	gpx1	Synpcc7942_1214	0.48	+1.3
1,237,269	-	gpx1	Synpcc7942_1214	0.50	+0.5
1,237,269	-	gpx1	Synpcc7942_1214	0.50	-1.6
1,237,280	-	gpx1	Synpcc7942_1214	0.52	+0.8
1,237,285	+	gpx1	Synpcc7942_1214	0.53	-0.7
1,237,293	-	gpx1	Synpcc7942_1214	0.55	+1.3
1,237,306	+	gpx1	Synpcc7942_1214	0.57	+1.0
1,237,306	+	gpx1	Synpcc7942_1214	0.57	+2.7
1,237,306	+	gpx1	Synpcc7942_1214	0.57	+0.4
1,237,314	-	gpx1	Synpcc7942_1214	0.59	+1.2
1,237,324	-	gpx1	Synpcc7942_1214	0.61	+0.2
1,237,324	-	gpx1	Synpcc7942_1214	0.61	-0.4
1,237,324	-	gpx1	Synpcc7942_1214	0.61	+4.1
1,237,355	+	gpx1	Synpcc7942_1214	0.67	+0.4
1,237,355	+	gpx1	Synpcc7942_1214	0.67	-1.7
1,237,355	+	gpx1	Synpcc7942_1214	0.67	-0.4
1,237,363	-	gpx1	Synpcc7942_1214	0.69	+1.2
1,237,363	-	gpx1	Synpcc7942_1214	0.69	-2.4
1,237,370	+	gpx1	Synpcc7942_1214	0.70	+2.1
1,237,373	-	gpx1	Synpcc7942_1214	0.71	-3.1
1,237,373	-	gpx1	Synpcc7942_1214	0.71	+1.2
1,237,376	+	gpx1	Synpcc7942_1214	0.71	+0.6
1,237,430	+	gpx1	Synpcc7942_1214	0.82	+0.9
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-1.4
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-0.8
1,237,440	+	gpx1	Synpcc7942_1214	0.84	+0.6
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-2.6
1,237,440	+	gpx1	Synpcc7942_1214	0.84	+1.0
1,237,440	+	gpx1	Synpcc7942_1214	0.84	+1.2
1,237,440	+	gpx1	Synpcc7942_1214	0.84	+1.2
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-0.3
1,237,440	+	gpx1	Synpcc7942_1214	0.84	+3.9
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-3.0
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-0.8
1,237,440	+	gpx1	Synpcc7942_1214	0.84	-0.5
1,237,440	+	gpx1	Synpcc7942_1214	0.84	+1.5
1,237,448	-	gpx1	Synpcc7942_1214	0.86	-0.0
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+2.5
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+2.4
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+0.8
1,237,448	-	gpx1	Synpcc7942_1214	0.86	-0.8
1,237,448	-	gpx1	Synpcc7942_1214	0.86	-2.1
1,237,448	-	gpx1	Synpcc7942_1214	0.86	-2.1
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+2.7
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+3.5
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+0.7
1,237,448	-	gpx1	Synpcc7942_1214	0.86	+1.2
1,237,449	+	gpx1	Synpcc7942_1214	0.86	+0.2
1,237,467	+	gpx1	Synpcc7942_1214	0.89	+0.2
1,237,475	-				+2.0
1,237,482	+				-3.6
1,237,490	-				-2.1
1,237,490	-				-0.7
1,237,515	+				+1.4
1,237,522	+				+2.0
1,237,522	+				+0.2
1,237,523	-				-0.2
1,237,543	+				-0.7
1,237,597	-				-2.4
1,237,602	+				+0.3
1,237,602	+				+0.0
1,237,602	+				+1.2
1,237,604	-				+2.2
1,237,610	-				-0.1
1,237,610	-				+1.2
1,237,610	-				-1.1
1,237,621	+				+0.2
1,237,649	-		Synpcc7942_1215	0.10	-0.4
1,237,651	-		Synpcc7942_1215	0.10	-0.3
1,237,690	+		Synpcc7942_1215	0.14	+0.2
1,237,708	+		Synpcc7942_1215	0.16	+0.2
1,237,716	-		Synpcc7942_1215	0.17	-2.4
1,237,717	-		Synpcc7942_1215	0.17	+1.3
1,237,717	-		Synpcc7942_1215	0.17	+1.4
1,237,738	-		Synpcc7942_1215	0.19	+1.2
1,237,748	-		Synpcc7942_1215	0.20	+0.7
1,237,807	+		Synpcc7942_1215	0.26	+1.2
1,237,810	-		Synpcc7942_1215	0.26	+2.5
1,237,823	+		Synpcc7942_1215	0.27	+0.8
1,237,823	+		Synpcc7942_1215	0.27	-0.4
1,237,825	+		Synpcc7942_1215	0.28	+0.2
1,237,826	-		Synpcc7942_1215	0.28	+0.7
1,237,838	+		Synpcc7942_1215	0.29	+0.2
1,237,840	+		Synpcc7942_1215	0.29	-0.6
1,237,843	-		Synpcc7942_1215	0.29	+2.2
1,237,848	+		Synpcc7942_1215	0.30	+0.8
1,237,852	+		Synpcc7942_1215	0.30	+0.5
1,237,868	+		Synpcc7942_1215	0.32	-0.2
1,237,868	+		Synpcc7942_1215	0.32	-2.1
1,237,868	+		Synpcc7942_1215	0.32	-0.9
1,237,871	+		Synpcc7942_1215	0.32	-1.0
1,237,880	+		Synpcc7942_1215	0.33	+0.2
1,237,909	+		Synpcc7942_1215	0.36	+2.1
1,237,951	-		Synpcc7942_1215	0.40	-0.0
1,237,965	+		Synpcc7942_1215	0.42	-1.1
1,237,988	+		Synpcc7942_1215	0.44	+0.8
1,238,017	+		Synpcc7942_1215	0.47	-0.7
1,238,027	+		Synpcc7942_1215	0.48	+1.1
1,238,065	+		Synpcc7942_1215	0.51	+0.4
1,238,074	+		Synpcc7942_1215	0.52	+0.6
1,238,087	+		Synpcc7942_1215	0.54	-1.2
1,238,102	+		Synpcc7942_1215	0.55	-2.4
1,238,105	-		Synpcc7942_1215	0.55	+0.2
1,238,125	+		Synpcc7942_1215	0.57	+0.8
1,238,132	+		Synpcc7942_1215	0.58	+0.4
1,238,200	-		Synpcc7942_1215	0.65	+0.9
1,238,221	+		Synpcc7942_1215	0.67	+1.8
1,238,221	+		Synpcc7942_1215	0.67	-0.1
1,238,221	+		Synpcc7942_1215	0.67	-1.4
1,238,229	-		Synpcc7942_1215	0.68	+0.0
1,238,229	-		Synpcc7942_1215	0.68	-2.6
1,238,241	-		Synpcc7942_1215	0.69	+1.1
1,238,244	+		Synpcc7942_1215	0.69	-0.1
1,238,249	+		Synpcc7942_1215	0.70	-0.7
1,238,249	+		Synpcc7942_1215	0.70	-2.6
1,238,249	+		Synpcc7942_1215	0.70	-1.4
1,238,252	-		Synpcc7942_1215	0.70	+1.6
1,238,256	+		Synpcc7942_1215	0.70	+1.8
1,238,257	-		Synpcc7942_1215	0.71	+2.9
1,238,257	-		Synpcc7942_1215	0.71	+0.2
1,238,257	-		Synpcc7942_1215	0.71	-0.5
1,238,257	-		Synpcc7942_1215	0.71	+1.2
1,238,257	-		Synpcc7942_1215	0.71	+0.2
1,238,257	-		Synpcc7942_1215	0.71	+0.5
1,238,257	-		Synpcc7942_1215	0.71	+2.0
1,238,259	+		Synpcc7942_1215	0.71	+0.2
1,238,264	-		Synpcc7942_1215	0.71	+0.3
1,238,279	-		Synpcc7942_1215	0.73	+0.0
1,238,335	+		Synpcc7942_1215	0.78	+1.4
1,238,343	-		Synpcc7942_1215	0.79	+0.2
1,238,343	-		Synpcc7942_1215	0.79	+1.0
1,238,369	-		Synpcc7942_1215	0.82	+1.1
1,238,369	-		Synpcc7942_1215	0.82	+1.4
1,238,384	+		Synpcc7942_1215	0.83	-0.4
1,238,386	-		Synpcc7942_1215	0.83	+0.8
1,238,391	-		Synpcc7942_1215	0.84	-2.4
1,238,392	-		Synpcc7942_1215	0.84	-0.4
1,238,402	+		Synpcc7942_1215	0.85	-1.1
1,238,456	+				+0.1
1,238,464	-				+0.8
1,238,489	-				-2.4
1,238,490	-				+0.9
1,238,518	-				+0.5
1,238,518	-				-0.4