Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1162

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
1,193,865	-		Synpcc7942_1160	0.52	+0.7
1,193,869	+		Synpcc7942_1160	0.52	+0.2
1,193,870	-		Synpcc7942_1160	0.52	+1.9
1,193,877	-		Synpcc7942_1160	0.53	+2.6
1,193,879	+		Synpcc7942_1160	0.53	+2.2
1,193,894	-		Synpcc7942_1160	0.55	-1.1
1,193,898	+		Synpcc7942_1160	0.55	-0.9
1,193,913	+		Synpcc7942_1160	0.57	+2.4
1,193,913	+		Synpcc7942_1160	0.57	-1.8
1,193,913	+		Synpcc7942_1160	0.57	+1.1
1,193,921	-		Synpcc7942_1160	0.58	-2.1
1,193,921	-		Synpcc7942_1160	0.58	-0.7
1,193,921	-		Synpcc7942_1160	0.58	+0.2
1,193,921	-		Synpcc7942_1160	0.58	+0.5
1,193,921	-		Synpcc7942_1160	0.58	+0.5
1,193,951	+		Synpcc7942_1160	0.61	-2.1
1,193,959	-		Synpcc7942_1160	0.62	-0.8
1,193,993	+		Synpcc7942_1160	0.66	+0.6
1,193,993	+		Synpcc7942_1160	0.66	-1.4
1,194,002	-		Synpcc7942_1160	0.67	-3.0
1,194,023	+		Synpcc7942_1160	0.69	+1.5
1,194,023	+		Synpcc7942_1160	0.69	+1.1
1,194,031	-		Synpcc7942_1160	0.70	+1.9
1,194,031	-		Synpcc7942_1160	0.70	+0.9
1,194,033	-		Synpcc7942_1160	0.70	+0.2
1,194,056	+		Synpcc7942_1160	0.73	-1.1
1,194,060	+		Synpcc7942_1160	0.73	-0.7
1,194,078	+		Synpcc7942_1160	0.75	-1.6
1,194,091	-		Synpcc7942_1160	0.77	+0.4
1,194,097	+		Synpcc7942_1160	0.78	+0.2
1,194,097	+		Synpcc7942_1160	0.78	+0.2
1,194,097	+		Synpcc7942_1160	0.78	+2.2
1,194,105	-		Synpcc7942_1160	0.78	-0.1
1,194,105	-		Synpcc7942_1160	0.78	+1.9
1,194,105	-		Synpcc7942_1160	0.78	-0.8
1,194,105	-		Synpcc7942_1160	0.78	+0.6
1,194,105	-		Synpcc7942_1160	0.78	+0.2
1,194,105	-		Synpcc7942_1160	0.78	+1.4
1,194,105	-		Synpcc7942_1160	0.78	+0.4
1,194,105	-		Synpcc7942_1160	0.78	+0.6
1,194,113	-		Synpcc7942_1160	0.79	+2.3
1,194,130	-		Synpcc7942_1160	0.81	-0.6
1,194,144	+		Synpcc7942_1160	0.83	+2.2
1,194,158	-		Synpcc7942_1160	0.84	-2.8
1,194,180	-		Synpcc7942_1160	0.87	+1.1
1,194,184	+		Synpcc7942_1160	0.87	+1.2
1,194,199	-		Synpcc7942_1160	0.89	-3.0
1,194,199	-		Synpcc7942_1160	0.89	-0.1
1,194,216	+				+2.4
1,194,224	-				-2.1
1,194,231	+				+1.2
1,194,231	+				+0.6
1,194,238	+				-0.4
1,194,238	+				-1.4
1,194,276	-				+1.1
1,194,294	+				+1.5
1,194,329	+				+0.9
1,194,336	+				+0.8
1,194,346	+				+1.2
1,194,396	+				-1.4
1,194,412	+		Synpcc7942_1161	0.13	+0.2
1,194,414	-		Synpcc7942_1161	0.13	+0.2
1,194,414	-		Synpcc7942_1161	0.13	-0.6
1,194,417	+		Synpcc7942_1161	0.14	-1.0
1,194,417	+		Synpcc7942_1161	0.14	-0.4
1,194,417	+		Synpcc7942_1161	0.14	+0.1
1,194,425	-		Synpcc7942_1161	0.16	+0.2
1,194,430	-		Synpcc7942_1161	0.17	+0.3
1,194,430	-		Synpcc7942_1161	0.17	+0.4
1,194,430	-		Synpcc7942_1161	0.17	+2.1
1,194,460	+		Synpcc7942_1161	0.23	-0.7
1,194,462	-		Synpcc7942_1161	0.23	+1.2
1,194,484	+		Synpcc7942_1161	0.27	+0.2
1,194,509	+		Synpcc7942_1161	0.33	+0.2
1,194,509	+		Synpcc7942_1161	0.33	-1.6
1,194,509	+		Synpcc7942_1161	0.33	-0.8
1,194,509	+		Synpcc7942_1161	0.33	-1.5
1,194,517	-		Synpcc7942_1161	0.34	-0.1
1,194,517	-		Synpcc7942_1161	0.34	-1.2
1,194,526	-		Synpcc7942_1161	0.36	+0.3
1,194,543	+		Synpcc7942_1161	0.39	+1.4
1,194,549	-		Synpcc7942_1161	0.41	+1.2
1,194,549	-		Synpcc7942_1161	0.41	+2.8
1,194,549	-		Synpcc7942_1161	0.41	+0.2
1,194,551	-		Synpcc7942_1161	0.41	+0.3
1,194,577	+		Synpcc7942_1161	0.46	+1.0
1,194,577	+		Synpcc7942_1161	0.46	+0.7
1,194,577	+		Synpcc7942_1161	0.46	+0.9
1,194,577	+		Synpcc7942_1161	0.46	-0.7
1,194,585	-		Synpcc7942_1161	0.48	+0.2
1,194,590	-		Synpcc7942_1161	0.49	+2.8
1,194,611	+		Synpcc7942_1161	0.53	+0.2
1,194,616	+		Synpcc7942_1161	0.54	+0.8
1,194,619	-		Synpcc7942_1161	0.55	-1.4
1,194,619	-		Synpcc7942_1161	0.55	-1.4
1,194,624	-		Synpcc7942_1161	0.56	-1.3
1,194,624	-		Synpcc7942_1161	0.56	-1.0
1,194,624	-		Synpcc7942_1161	0.56	-0.6
1,194,629	-		Synpcc7942_1161	0.57	+0.7
1,194,629	-		Synpcc7942_1161	0.57	+0.8
1,194,631	-		Synpcc7942_1161	0.57	-0.4
1,194,666	+		Synpcc7942_1161	0.64	+1.3
1,194,666	+		Synpcc7942_1161	0.64	+1.9
1,194,666	+		Synpcc7942_1161	0.64	-0.5
1,194,666	+		Synpcc7942_1161	0.64	-0.1
1,194,669	-		Synpcc7942_1161	0.65	+1.2
1,194,673	+		Synpcc7942_1161	0.66	+0.2
1,194,673	-		Synpcc7942_1161	0.66	+0.7
1,194,674	-		Synpcc7942_1161	0.66	-0.0
1,194,674	-		Synpcc7942_1161	0.66	+0.2
1,194,674	-		Synpcc7942_1161	0.66	+1.4
1,194,674	-				+3.8
1,194,674	-		Synpcc7942_1161	0.66	-0.6
1,194,674	-		Synpcc7942_1161	0.66	+0.8
1,194,674	-		Synpcc7942_1161	0.66	+0.2
1,194,674	-		Synpcc7942_1161	0.66	+0.5
1,194,674	-		Synpcc7942_1161	0.66	+1.8
1,194,679	+		Synpcc7942_1161	0.67	+0.5
1,194,681	-		Synpcc7942_1161	0.67	-0.8
1,194,687	-		Synpcc7942_1161	0.68	-0.3
1,194,691	+		Synpcc7942_1161	0.69	+0.2
1,194,775	-		Synpcc7942_1161	0.86	+0.7
1,194,782	-		Synpcc7942_1161	0.88	+0.7
1,194,789	+		Synpcc7942_1161	0.89	-1.4
1,194,797	-				-2.2
1,194,797	-				+1.5
1,194,797	-				-1.6
1,194,823	-				+1.2
1,194,823	-				-3.3
1,194,835	+				+0.2
1,194,835	+				-1.4
1,194,836	+				-1.6
1,194,836	+				-0.8
1,194,836	+				-2.0
1,194,844	-				+0.5
1,194,867	-				-0.3
1,194,869	-				-1.4
1,194,871	+				-0.8
1,194,871	+				-1.4
1,194,879	-				-0.4
1,194,879	-				-0.1
1,194,890	-				+2.1
1,194,896	+		Synpcc7942_1162	0.11	-0.9
1,194,896	+		Synpcc7942_1162	0.11	-1.8
1,194,904	-		Synpcc7942_1162	0.13	-0.4
1,194,904	-		Synpcc7942_1162	0.13	+1.7
1,194,921	+		Synpcc7942_1162	0.16	+1.4
1,194,929	-		Synpcc7942_1162	0.18	+2.4
1,194,949	-		Synpcc7942_1162	0.23	+0.9
1,194,952	+		Synpcc7942_1162	0.23	-0.9
1,194,952	+		Synpcc7942_1162	0.23	+1.8
1,194,995	-		Synpcc7942_1162	0.33	-1.9
1,195,000	+		Synpcc7942_1162	0.34	+0.1
1,195,000	+		Synpcc7942_1162	0.34	-0.8
1,195,000	+		Synpcc7942_1162	0.34	-0.4
1,195,000	+		Synpcc7942_1162	0.34	+0.4
1,195,001	+		Synpcc7942_1162	0.34	+0.5
1,195,016	+		Synpcc7942_1162	0.37	+1.0
1,195,016	+		Synpcc7942_1162	0.37	-1.4
1,195,019	-		Synpcc7942_1162	0.38	+0.4
1,195,040	+		Synpcc7942_1162	0.43	+0.7
1,195,040	+		Synpcc7942_1162	0.43	-2.6
1,195,040	+		Synpcc7942_1162	0.43	-2.6
1,195,048	-		Synpcc7942_1162	0.44	+0.4
1,195,048	-		Synpcc7942_1162	0.44	-1.4
1,195,050	+		Synpcc7942_1162	0.45	-2.4
1,195,050	+		Synpcc7942_1162	0.45	+1.2
1,195,079	+		Synpcc7942_1162	0.51	+1.3
1,195,100	+		Synpcc7942_1162	0.56	-0.4
1,195,106	-		Synpcc7942_1162	0.57	+0.7
1,195,106	-		Synpcc7942_1162	0.57	+0.6
1,195,120	-		Synpcc7942_1162	0.60	-0.3
1,195,123	+		Synpcc7942_1162	0.61	+2.1
1,195,123	+		Synpcc7942_1162	0.61	+1.8
1,195,131	-		Synpcc7942_1162	0.62	+0.8
1,195,131	-		Synpcc7942_1162	0.62	+0.6
1,195,154	+		Synpcc7942_1162	0.68	+1.0
1,195,154	+		Synpcc7942_1162	0.68	-1.4
1,195,162	-		Synpcc7942_1162	0.69	+0.4
1,195,183	-		Synpcc7942_1162	0.74	+0.2
1,195,198	-		Synpcc7942_1162	0.77	-2.4
1,195,201	+		Synpcc7942_1162	0.78	+0.2
1,195,207	+		Synpcc7942_1162	0.79	-0.8
1,195,209	-		Synpcc7942_1162	0.80	+0.6
1,195,209	-		Synpcc7942_1162	0.80	-0.1
1,195,213	+		Synpcc7942_1162	0.80	-1.0
1,195,213	+		Synpcc7942_1162	0.80	+0.7
1,195,214	-		Synpcc7942_1162	0.81	+1.9
1,195,215	-		Synpcc7942_1162	0.81	+0.6
1,195,221	-		Synpcc7942_1162	0.82	-1.6
1,195,221	-		Synpcc7942_1162	0.82	+2.8
1,195,240	-		Synpcc7942_1162	0.86	-1.1
1,195,267	+				+1.4
1,195,267	+				+0.4
1,195,267	+				+0.1
1,195,267	+				+0.3
1,195,267	+				+0.7
1,195,267	+				+0.5
1,195,275	-				-1.4
1,195,275	-				+0.8
1,195,275	-				+0.9
1,195,275	-				+1.2
1,195,275	-				-1.3
1,195,275	-				+0.4
1,195,275	-				+0.6
1,195,275	-				-0.2
1,195,287	-				+0.7
1,195,302	+				+1.3
1,195,302	+				-1.4
1,195,302	+				+0.4
1,195,306	+				+0.2
1,195,310	-				+1.4
1,195,371	+				+1.9
1,195,390	-				-0.5
1,195,393	+				+0.5
1,195,401	-				+2.7
1,195,408	+				+1.6
1,195,411	-				+0.8
1,195,418	+				-1.0
1,195,424	-				+0.6
1,195,441	+		Synpcc7942_1163	0.11	+1.4
1,195,441	+				+1.2
1,195,450	-		Synpcc7942_1163	0.11	-2.6
1,195,451	+		Synpcc7942_1163	0.11	-0.0
1,195,460	-		Synpcc7942_1163	0.12	-2.8
1,195,477	+		Synpcc7942_1163	0.14	-0.8
1,195,482	+		Synpcc7942_1163	0.14	-1.8
1,195,483	-		Synpcc7942_1163	0.14	-1.1
1,195,522	+		Synpcc7942_1163	0.17	-0.1
1,195,539	-		Synpcc7942_1163	0.19	+1.2
1,195,542	+		Synpcc7942_1163	0.19	-0.2
1,195,546	-		Synpcc7942_1163	0.19	+1.2
1,195,550	-		Synpcc7942_1163	0.20	+2.2
1,195,551	-		Synpcc7942_1163	0.20	+1.0
1,195,567	-		Synpcc7942_1163	0.21	+0.4
1,195,580	-		Synpcc7942_1163	0.22	+3.4
1,195,590	+		Synpcc7942_1163	0.23	+0.4
1,195,590	+		Synpcc7942_1163	0.23	-0.8
1,195,590	+				+0.2
1,195,590	+		Synpcc7942_1163	0.23	-2.8
1,195,644	+		Synpcc7942_1163	0.28	+1.1
1,195,644	+		Synpcc7942_1163	0.28	+0.2
1,195,657	+		Synpcc7942_1163	0.29	+0.2
1,195,662	+		Synpcc7942_1163	0.29	-1.6
1,195,665	-		Synpcc7942_1163	0.30	-0.8
1,195,677	+		Synpcc7942_1163	0.31	-2.0
1,195,685	-		Synpcc7942_1163	0.31	+3.4
1,195,685	-		Synpcc7942_1163	0.31	+0.8
1,195,687	-		Synpcc7942_1163	0.31	+0.1
1,195,687	-		Synpcc7942_1163	0.31	-0.6
1,195,687	-		Synpcc7942_1163	0.31	-0.8
1,195,741	-		Synpcc7942_1163	0.36	-2.1
1,195,779	+		Synpcc7942_1163	0.39	-1.4
1,195,799	-		Synpcc7942_1163	0.41	-0.0
1,195,806	-		Synpcc7942_1163	0.42	+0.8
1,195,814	+		Synpcc7942_1163	0.42	+1.3
1,195,815	+		Synpcc7942_1163	0.42	+0.5
1,195,815	+		Synpcc7942_1163	0.42	+0.6
1,195,817	+		Synpcc7942_1163	0.43	+1.4
1,195,822	-		Synpcc7942_1163	0.43	+0.2
1,195,823	-		Synpcc7942_1163	0.43	+0.7
1,195,842	+		Synpcc7942_1163	0.45	+1.1
1,195,874	+		Synpcc7942_1163	0.47	+3.2
1,195,882	-		Synpcc7942_1163	0.48	-0.4
1,195,882	-		Synpcc7942_1163	0.48	-1.1
1,195,903	+		Synpcc7942_1163	0.50	+1.0
1,195,903	+		Synpcc7942_1163	0.50	+0.4
1,195,903	+		Synpcc7942_1163	0.50	+0.2
1,195,911	-		Synpcc7942_1163	0.51	-1.1
1,195,957	+		Synpcc7942_1163	0.54	+0.2
1,196,003	+		Synpcc7942_1163	0.58	-0.2
1,196,024	-		Synpcc7942_1163	0.60	+1.3
1,196,027	+		Synpcc7942_1163	0.60	-0.8
1,196,035	-		Synpcc7942_1163	0.61	+0.8
1,196,035	-		Synpcc7942_1163	0.61	+0.5
1,196,035	-		Synpcc7942_1163	0.61	-0.0
1,196,059	+		Synpcc7942_1163	0.63	-0.8
1,196,071	+		Synpcc7942_1163	0.64	-2.6
1,196,085	-		Synpcc7942_1163	0.65	+0.9
1,196,085	-		Synpcc7942_1163	0.65	-0.8
1,196,085	-		Synpcc7942_1163	0.65	+1.8
1,196,085	-		Synpcc7942_1163	0.65	+0.9
1,196,085	-		Synpcc7942_1163	0.65	+3.2
1,196,085	-		Synpcc7942_1163	0.65	-0.8
1,196,090	-		Synpcc7942_1163	0.66	-0.7
1,196,098	+		Synpcc7942_1163	0.66	-0.1
1,196,129	+		Synpcc7942_1163	0.69	-3.1
1,196,129	+		Synpcc7942_1163	0.69	-0.6
1,196,139	-		Synpcc7942_1163	0.70	+2.2
1,196,145	-		Synpcc7942_1163	0.70	-1.8
1,196,164	+		Synpcc7942_1163	0.72	+1.5
1,196,164	+		Synpcc7942_1163	0.72	+2.4
1,196,164	+		Synpcc7942_1163	0.72	+2.2
1,196,164	+		Synpcc7942_1163	0.72	+0.6
1,196,164	+		Synpcc7942_1163	0.72	-0.4
1,196,164	+		Synpcc7942_1163	0.72	+2.7
1,196,172	-		Synpcc7942_1163	0.73	+0.5
1,196,172	-		Synpcc7942_1163	0.73	+0.5
1,196,182	-		Synpcc7942_1163	0.74	-1.0
1,196,191	+		Synpcc7942_1163	0.74	+1.2
1,196,228	+		Synpcc7942_1163	0.77	-0.1