Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1119

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
1,135,833	-		Synpcc7942_1118	0.50	+0.3
1,135,869	-		Synpcc7942_1118	0.52	+1.0
1,135,926	-		Synpcc7942_1118	0.56	+0.6
1,135,928	+		Synpcc7942_1118	0.56	+1.7
1,135,974	+		Synpcc7942_1118	0.59	-0.7
1,136,001	+		Synpcc7942_1118	0.60	-4.2
1,136,001	+		Synpcc7942_1118	0.60	+1.9
1,136,009	-		Synpcc7942_1118	0.61	+1.0
1,136,020	-		Synpcc7942_1118	0.62	+0.3
1,136,198	-		Synpcc7942_1118	0.73	+0.6
1,136,203	+		Synpcc7942_1118	0.73	+1.6
1,136,224	+		Synpcc7942_1118	0.75	+1.3
1,136,249	+		Synpcc7942_1118	0.76	+0.6
1,136,249	+		Synpcc7942_1118	0.76	-1.9
1,136,257	-		Synpcc7942_1118	0.77	+1.0
1,136,257	-		Synpcc7942_1118	0.77	+0.4
1,136,257	-		Synpcc7942_1118	0.77	-3.0
1,136,257	-		Synpcc7942_1118	0.77	+0.7
1,136,293	+		Synpcc7942_1118	0.79	-0.4
1,136,309	+		Synpcc7942_1118	0.80	+1.7
1,136,326	+		Synpcc7942_1118	0.81	-1.9
1,136,356	+		Synpcc7942_1118	0.83	+0.6
1,136,435	+		Synpcc7942_1118	0.88	-2.4
1,136,435	+		Synpcc7942_1118	0.88	+1.1
1,136,435	+		Synpcc7942_1118	0.88	+0.1
1,136,435	+		Synpcc7942_1118	0.88	+0.4
1,136,435	+		Synpcc7942_1118	0.88	+0.7
1,136,443	-		Synpcc7942_1118	0.89	-0.1
1,136,443	-		Synpcc7942_1118	0.89	-1.0
1,136,443	-		Synpcc7942_1118	0.89	+1.0
1,136,443	-		Synpcc7942_1118	0.89	-1.2
1,136,443	-		Synpcc7942_1118	0.89	+0.7
1,136,443	-		Synpcc7942_1118	0.89	-2.7
1,136,457	-		Synpcc7942_1118	0.90	+0.9
1,136,514	+				-0.8
1,136,517	-				-2.4
1,136,531	+				+0.7
1,136,534	-				-1.0
1,136,583	-				+2.6
1,136,603	-				-0.4
1,136,617	+				+1.6
1,136,627	+				-0.9
1,136,643	-				+0.8
1,136,666	-				+1.7
1,136,728	+		Synpcc7942_1119	0.16	+0.8
1,136,850	-		Synpcc7942_1119	0.34	-0.9
1,136,864	-		Synpcc7942_1119	0.36	-0.9
1,136,871	-		Synpcc7942_1119	0.37	-0.1
1,136,881	-		Synpcc7942_1119	0.39	-0.9
1,136,915	-		Synpcc7942_1119	0.44	-0.9
1,136,917	-		Synpcc7942_1119	0.44	+0.7
1,136,945	+		Synpcc7942_1119	0.48	-1.9
1,136,953	-		Synpcc7942_1119	0.50	+1.1
1,136,960	-		Synpcc7942_1119	0.51	-1.0
1,137,005	+		Synpcc7942_1119	0.57	-1.6
1,137,013	-		Synpcc7942_1119	0.58	-0.3
1,137,013	-		Synpcc7942_1119	0.58	+1.9
1,137,059	-		Synpcc7942_1119	0.65	-3.2
1,137,059	-		Synpcc7942_1119	0.65	-0.9
1,137,071	+		Synpcc7942_1119	0.67	-0.4
1,137,073	+		Synpcc7942_1119	0.67	-0.9
1,137,129	-		Synpcc7942_1119	0.76	-1.3
1,137,204	+		Synpcc7942_1119	0.87	-0.9
1,137,214	+		Synpcc7942_1119	0.88	+0.7
1,137,264	-				-1.1
1,137,278	+				-0.9
1,137,283	+				-0.2
1,137,299	-				+0.0
1,137,299	-				+0.7
1,137,313	-				-0.6
1,137,328	+				-0.3
1,137,336	-				+0.0
1,137,343	-				+0.9
1,137,383	+				+1.1
1,137,383	+				-0.7
1,137,384	-				+1.1
1,137,391	-				-0.3
1,137,391	-				-2.2
1,137,464	+				-1.7
1,137,464	+				-0.7
1,137,464	+				+1.1
1,137,472	-				+1.0
1,137,499	+				+0.7
1,137,519	-				-1.7
1,137,519	-				+0.7
1,137,519	-				-1.2
1,137,547	+				-0.4
1,137,571	+				-2.2
1,137,599	+				-1.6
1,137,614	-				-2.4
1,137,614	-				-2.7
1,137,625	+				+0.7
1,137,633	-				-4.9
1,137,639	+				-1.4
1,137,647	-				-2.9
1,137,647	-				-2.7
1,137,647	-				-0.9
1,137,652	-				-1.4
1,137,698	+				+1.1
1,137,709	-				-2.2
1,137,711	+				-1.9
1,137,711	+				+0.1
1,137,719	-				+1.1
1,137,730	+				+0.2
1,137,733	-				+1.7
1,137,733	-				+1.9
1,137,733	-				-1.6
1,137,733	-				-1.9
1,137,733	-				-0.9
1,137,763	+				-1.9
1,137,817	+				+0.4
1,137,818	+				+1.0
1,137,831	-				-0.9
1,137,857	+				-1.7
1,137,865	-				+0.3
1,137,866	-				-2.2
1,137,887	+		Synpcc7942_1120	0.17	-0.9
1,137,887	+		Synpcc7942_1120	0.17	+0.3
1,137,895	-		Synpcc7942_1120	0.22	+0.1
1,137,895	-		Synpcc7942_1120	0.22	-1.7
1,137,974	+		Synpcc7942_1120	0.73	+1.3
1,137,989	-		Synpcc7942_1120	0.83	-1.4
1,138,010	+				-1.1
1,138,098	+				-0.9
1,138,131	+				-0.3
1,138,140	+				-1.6
1,138,140	+				-0.0
1,138,140	+				+0.3
1,138,148	-				-0.3
1,138,148	-				-0.4
1,138,149	+				+1.5
1,138,151	-				+0.8
1,138,163	+				+0.4
1,138,163	+				-2.0
1,138,163	+				-0.5
1,138,171	+				+1.7
1,138,176	+				-0.4
1,138,195	+				-0.9
1,138,195	+				-1.1
1,138,203	-				+0.1
1,138,211	+				+0.5
1,138,211	+				+0.1
1,138,217	-				+0.9
1,138,219	+				+0.1
1,138,219	-				-0.5
1,138,224	+				+0.8
1,138,249	+				-0.9
1,138,255	+				-0.1
1,138,266	+				+1.3
1,138,269	-				-0.2
1,138,269	-				+3.4
1,138,284	+				+0.1