Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0963 and Synpcc7942_0964 are separated by 216 nucleotides Synpcc7942_0964 and amt1 are separated by 13 nucleotides amt1 and Synpcc7942_0966 are separated by 8 nucleotides Synpcc7942_0966 and hemC are separated by 152 nucleotides
Synpcc7942_0963: Synpcc7942_0963 - probable methyltransferase, at 971,259 to 971,639
_0963
Synpcc7942_0964: Synpcc7942_0964 - hypothetical protein, at 971,856 to 972,374
_0964
Synpcc7942_0965: amt1 - ammonium transporter protein Amt1-like, at 972,388 to 973,350
amt1
Synpcc7942_0966: Synpcc7942_0966 - hypothetical protein, at 973,359 to 973,946
_0966
Synpcc7942_0967: hemC - porphobilinogen deaminase, at 974,099 to 975,061
hemC
Position (kb) 972
973
974 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 971.392 kb on - strand at 971.435 kb on - strand, within Synpcc7942_0963 at 971.439 kb on + strand, within Synpcc7942_0963 at 971.443 kb on - strand at 971.447 kb on - strand, within Synpcc7942_0963 at 971.447 kb on - strand, within Synpcc7942_0963 at 971.466 kb on - strand, within Synpcc7942_0963 at 971.485 kb on + strand, within Synpcc7942_0963 at 971.495 kb on + strand, within Synpcc7942_0963 at 971.495 kb on + strand, within Synpcc7942_0963 at 971.495 kb on + strand, within Synpcc7942_0963 at 971.503 kb on - strand, within Synpcc7942_0963 at 971.503 kb on - strand at 971.504 kb on + strand, within Synpcc7942_0963 at 971.514 kb on - strand, within Synpcc7942_0963 at 971.514 kb on - strand, within Synpcc7942_0963 at 971.523 kb on + strand, within Synpcc7942_0963 at 971.547 kb on - strand, within Synpcc7942_0963 at 971.548 kb on + strand, within Synpcc7942_0963 at 971.569 kb on + strand, within Synpcc7942_0963 at 971.592 kb on - strand, within Synpcc7942_0963 at 971.592 kb on - strand, within Synpcc7942_0963 at 971.614 kb on + strand at 971.647 kb on - strand at 971.647 kb on - strand at 971.702 kb on - strand at 971.702 kb on - strand at 971.707 kb on - strand at 971.721 kb on + strand at 971.721 kb on + strand at 971.729 kb on - strand at 971.762 kb on + strand at 971.770 kb on - strand at 971.808 kb on + strand at 971.811 kb on - strand at 971.848 kb on - strand at 971.855 kb on + strand at 971.907 kb on - strand at 971.907 kb on - strand at 971.907 kb on - strand at 971.929 kb on - strand, within Synpcc7942_0964 at 971.945 kb on + strand, within Synpcc7942_0964 at 971.957 kb on + strand, within Synpcc7942_0964 at 971.979 kb on + strand, within Synpcc7942_0964 at 972.002 kb on + strand, within Synpcc7942_0964 at 972.009 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on - strand, within Synpcc7942_0964 at 972.022 kb on - strand, within Synpcc7942_0964 at 972.022 kb on - strand, within Synpcc7942_0964 at 972.031 kb on + strand, within Synpcc7942_0964 at 972.031 kb on + strand, within Synpcc7942_0964 at 972.039 kb on - strand, within Synpcc7942_0964 at 972.048 kb on + strand, within Synpcc7942_0964 at 972.056 kb on - strand, within Synpcc7942_0964 at 972.056 kb on - strand, within Synpcc7942_0964 at 972.089 kb on + strand, within Synpcc7942_0964 at 972.089 kb on + strand, within Synpcc7942_0964 at 972.089 kb on + strand, within Synpcc7942_0964 at 972.095 kb on + strand, within Synpcc7942_0964 at 972.097 kb on - strand, within Synpcc7942_0964 at 972.097 kb on - strand, within Synpcc7942_0964 at 972.097 kb on - strand, within Synpcc7942_0964 at 972.098 kb on - strand, within Synpcc7942_0964 at 972.103 kb on - strand, within Synpcc7942_0964 at 972.105 kb on + strand, within Synpcc7942_0964 at 972.132 kb on + strand, within Synpcc7942_0964 at 972.134 kb on + strand, within Synpcc7942_0964 at 972.148 kb on - strand, within Synpcc7942_0964 at 972.159 kb on + strand, within Synpcc7942_0964 at 972.159 kb on + strand, within Synpcc7942_0964 at 972.159 kb on + strand, within Synpcc7942_0964 at 972.167 kb on - strand, within Synpcc7942_0964 at 972.172 kb on + strand, within Synpcc7942_0964 at 972.172 kb on + strand, within Synpcc7942_0964 at 972.172 kb on + strand, within Synpcc7942_0964 at 972.180 kb on - strand, within Synpcc7942_0964 at 972.180 kb on - strand, within Synpcc7942_0964 at 972.217 kb on + strand, within Synpcc7942_0964 at 972.241 kb on + strand, within Synpcc7942_0964 at 972.265 kb on - strand, within Synpcc7942_0964 at 972.318 kb on + strand, within Synpcc7942_0964 at 972.325 kb on - strand at 972.325 kb on - strand at 972.374 kb on + strand at 972.376 kb on - strand at 972.376 kb on - strand at 972.380 kb on + strand at 972.385 kb on + strand at 972.392 kb on - strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.415 kb on - strand at 972.424 kb on + strand at 972.424 kb on + strand at 972.432 kb on - strand at 972.446 kb on + strand at 972.458 kb on + strand at 972.458 kb on + strand at 972.466 kb on - strand at 972.486 kb on - strand, within amt1 at 972.495 kb on + strand, within amt1 at 972.495 kb on + strand, within amt1 at 972.498 kb on - strand, within amt1 at 972.502 kb on + strand, within amt1 at 972.503 kb on - strand, within amt1 at 972.503 kb on - strand, within amt1 at 972.529 kb on - strand, within amt1 at 972.583 kb on + strand, within amt1 at 972.596 kb on + strand, within amt1 at 972.633 kb on + strand, within amt1 at 972.709 kb on + strand, within amt1 at 972.723 kb on - strand, within amt1 at 972.732 kb on + strand, within amt1 at 972.740 kb on - strand, within amt1 at 972.766 kb on + strand, within amt1 at 972.821 kb on - strand, within amt1 at 972.830 kb on - strand, within amt1 at 972.830 kb on - strand, within amt1 at 972.835 kb on - strand, within amt1 at 972.867 kb on - strand, within amt1 at 972.872 kb on - strand, within amt1 at 972.894 kb on - strand, within amt1 at 972.899 kb on + strand at 972.924 kb on + strand, within amt1 at 972.956 kb on - strand, within amt1 at 972.958 kb on + strand, within amt1 at 972.959 kb on + strand, within amt1 at 972.961 kb on + strand, within amt1 at 972.980 kb on + strand, within amt1 at 972.988 kb on - strand, within amt1 at 973.004 kb on + strand, within amt1 at 973.006 kb on - strand, within amt1 at 973.050 kb on + strand, within amt1 at 973.068 kb on - strand, within amt1 at 973.084 kb on + strand, within amt1 at 973.115 kb on - strand, within amt1 at 973.115 kb on - strand, within amt1 at 973.118 kb on - strand, within amt1 at 973.120 kb on - strand, within amt1 at 973.120 kb on - strand, within amt1 at 973.153 kb on + strand, within amt1 at 973.161 kb on - strand, within amt1 at 973.232 kb on + strand, within amt1 at 973.240 kb on - strand, within amt1 at 973.306 kb on - strand at 973.312 kb on + strand at 973.320 kb on + strand at 973.324 kb on + strand at 973.345 kb on + strand at 973.352 kb on - strand at 973.352 kb on - strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.362 kb on + strand at 973.365 kb on - strand at 973.380 kb on - strand at 973.382 kb on + strand at 973.385 kb on - strand at 973.388 kb on - strand at 973.401 kb on - strand at 973.401 kb on - strand at 973.406 kb on - strand at 973.493 kb on + strand, within Synpcc7942_0966 at 973.524 kb on - strand, within Synpcc7942_0966 at 973.524 kb on - strand, within Synpcc7942_0966 at 973.551 kb on - strand, within Synpcc7942_0966 at 973.573 kb on + strand, within Synpcc7942_0966 at 973.575 kb on - strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.594 kb on + strand, within Synpcc7942_0966 at 973.600 kb on - strand, within Synpcc7942_0966 at 973.600 kb on - strand, within Synpcc7942_0966 at 973.602 kb on + strand, within Synpcc7942_0966 at 973.602 kb on - strand, within Synpcc7942_0966 at 973.607 kb on + strand, within Synpcc7942_0966 at 973.610 kb on - strand, within Synpcc7942_0966 at 973.612 kb on + strand, within Synpcc7942_0966 at 973.620 kb on - strand, within Synpcc7942_0966 at 973.630 kb on - strand, within Synpcc7942_0966 at 973.646 kb on - strand, within Synpcc7942_0966 at 973.653 kb on + strand, within Synpcc7942_0966 at 973.661 kb on - strand, within Synpcc7942_0966 at 973.695 kb on + strand, within Synpcc7942_0966 at 973.704 kb on - strand, within Synpcc7942_0966 at 973.706 kb on + strand, within Synpcc7942_0966 at 973.706 kb on + strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.716 kb on + strand, within Synpcc7942_0966 at 973.716 kb on - strand, within Synpcc7942_0966 at 973.716 kb on - strand, within Synpcc7942_0966 at 973.716 kb on - strand, within Synpcc7942_0966 at 973.720 kb on + strand, within Synpcc7942_0966 at 973.724 kb on - strand, within Synpcc7942_0966 at 973.728 kb on - strand, within Synpcc7942_0966 at 973.811 kb on + strand, within Synpcc7942_0966 at 973.817 kb on - strand, within Synpcc7942_0966 at 973.824 kb on - strand, within Synpcc7942_0966 at 973.824 kb on - strand, within Synpcc7942_0966 at 973.908 kb on - strand at 973.932 kb on - strand at 973.932 kb on - strand at 973.932 kb on - strand at 973.932 kb on - strand at 973.959 kb on + strand at 973.959 kb on + strand at 973.959 kb on + strand at 973.959 kb on + strand at 973.964 kb on + strand at 973.964 kb on + strand at 973.967 kb on - strand at 973.967 kb on - strand at 973.967 kb on - strand at 973.971 kb on + strand at 973.971 kb on + strand at 973.972 kb on + strand at 973.972 kb on - strand at 973.979 kb on - strand at 973.987 kb on + strand at 973.996 kb on - strand at 973.996 kb on - strand at 974.000 kb on - strand at 974.000 kb on - strand at 974.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 971,392 - -0.9 971,435 - Synpcc7942_0963 0.46 -2.7 971,439 + Synpcc7942_0963 0.47 -2.7 971,443 - -0.5 971,447 - Synpcc7942_0963 0.49 +1.0 971,447 - Synpcc7942_0963 0.49 -1.3 971,466 - Synpcc7942_0963 0.54 +2.1 971,485 + Synpcc7942_0963 0.59 +2.6 971,495 + Synpcc7942_0963 0.62 +0.1 971,495 + Synpcc7942_0963 0.62 +0.3 971,495 + Synpcc7942_0963 0.62 +0.7 971,503 - Synpcc7942_0963 0.64 -1.7 971,503 - -1.9 971,504 + Synpcc7942_0963 0.64 -0.3 971,514 - Synpcc7942_0963 0.67 +0.2 971,514 - Synpcc7942_0963 0.67 +1.1 971,523 + Synpcc7942_0963 0.69 +0.5 971,547 - Synpcc7942_0963 0.76 -0.7 971,548 + Synpcc7942_0963 0.76 +1.2 971,569 + Synpcc7942_0963 0.81 +1.0 971,592 - Synpcc7942_0963 0.87 -0.7 971,592 - Synpcc7942_0963 0.87 +2.3 971,614 + +0.1 971,647 - +0.1 971,647 - -2.7 971,702 - -1.9 971,702 - -0.2 971,707 - +1.3 971,721 + -2.3 971,721 + +1.1 971,729 - +0.9 971,762 + -1.9 971,770 - -2.2 971,808 + -1.9 971,811 - -0.9 971,848 - +0.8 971,855 + +0.2 971,907 - -0.6 971,907 - +2.1 971,907 - -0.5 971,929 - Synpcc7942_0964 0.14 -0.9 971,945 + Synpcc7942_0964 0.17 -0.9 971,957 + Synpcc7942_0964 0.19 -2.7 971,979 + Synpcc7942_0964 0.24 -1.5 972,002 + Synpcc7942_0964 0.28 +1.1 972,009 + Synpcc7942_0964 0.29 -1.9 972,014 + Synpcc7942_0964 0.30 -1.2 972,014 + Synpcc7942_0964 0.30 +0.4 972,014 + Synpcc7942_0964 0.30 -1.5 972,014 + Synpcc7942_0964 0.30 +1.3 972,014 + Synpcc7942_0964 0.30 +0.4 972,014 - Synpcc7942_0964 0.30 -1.9 972,022 - Synpcc7942_0964 0.32 -0.9 972,022 - Synpcc7942_0964 0.32 +0.6 972,031 + Synpcc7942_0964 0.34 +1.1 972,031 + Synpcc7942_0964 0.34 -3.3 972,039 - Synpcc7942_0964 0.35 -2.0 972,048 + Synpcc7942_0964 0.37 -4.2 972,056 - Synpcc7942_0964 0.39 -0.9 972,056 - Synpcc7942_0964 0.39 -1.2 972,089 + Synpcc7942_0964 0.45 -0.9 972,089 + Synpcc7942_0964 0.45 -1.9 972,089 + Synpcc7942_0964 0.45 -0.9 972,095 + Synpcc7942_0964 0.46 -1.9 972,097 - Synpcc7942_0964 0.46 -1.5 972,097 - Synpcc7942_0964 0.46 +0.1 972,097 - Synpcc7942_0964 0.46 -1.5 972,098 - Synpcc7942_0964 0.47 +0.7 972,103 - Synpcc7942_0964 0.48 +2.1 972,105 + Synpcc7942_0964 0.48 -0.3 972,132 + Synpcc7942_0964 0.53 -1.9 972,134 + Synpcc7942_0964 0.54 -0.3 972,148 - Synpcc7942_0964 0.56 +1.9 972,159 + Synpcc7942_0964 0.58 +1.0 972,159 + Synpcc7942_0964 0.58 +0.1 972,159 + Synpcc7942_0964 0.58 -1.5 972,167 - Synpcc7942_0964 0.60 -0.9 972,172 + Synpcc7942_0964 0.61 -3.7 972,172 + Synpcc7942_0964 0.61 +1.3 972,172 + Synpcc7942_0964 0.61 -1.9 972,180 - Synpcc7942_0964 0.62 +1.4 972,180 - Synpcc7942_0964 0.62 +1.1 972,217 + Synpcc7942_0964 0.70 +2.8 972,241 + Synpcc7942_0964 0.74 -1.1 972,265 - Synpcc7942_0964 0.79 -0.1 972,318 + Synpcc7942_0964 0.89 +0.4 972,325 - -0.6 972,325 - +0.3 972,374 + -0.5 972,376 - -0.1 972,376 - +1.4 972,380 + -1.9 972,385 + -1.7 972,392 - -1.0 972,407 + -3.2 972,407 + -2.2 972,407 + -1.8 972,407 + -1.4 972,415 - +1.0 972,424 + -0.5 972,424 + -1.1 972,432 - -0.4 972,446 + -1.7 972,458 + -1.5 972,458 + -1.5 972,466 - -2.2 972,486 - amt1 Synpcc7942_0965 0.10 -1.5 972,495 + amt1 Synpcc7942_0965 0.11 +1.1 972,495 + amt1 Synpcc7942_0965 0.11 -0.0 972,498 - amt1 Synpcc7942_0965 0.11 -2.8 972,502 + amt1 Synpcc7942_0965 0.12 -1.2 972,503 - amt1 Synpcc7942_0965 0.12 -2.2 972,503 - amt1 Synpcc7942_0965 0.12 -2.2 972,529 - amt1 Synpcc7942_0965 0.15 -1.6 972,583 + amt1 Synpcc7942_0965 0.20 -2.2 972,596 + amt1 Synpcc7942_0965 0.22 +0.1 972,633 + amt1 Synpcc7942_0965 0.25 -1.5 972,709 + amt1 Synpcc7942_0965 0.33 -0.2 972,723 - amt1 Synpcc7942_0965 0.35 -1.9 972,732 + amt1 Synpcc7942_0965 0.36 -0.9 972,740 - amt1 Synpcc7942_0965 0.37 -0.9 972,766 + amt1 Synpcc7942_0965 0.39 -1.9 972,821 - amt1 Synpcc7942_0965 0.45 -2.5 972,830 - amt1 Synpcc7942_0965 0.46 -2.5 972,830 - amt1 Synpcc7942_0965 0.46 -0.1 972,835 - amt1 Synpcc7942_0965 0.46 -0.1 972,867 - amt1 Synpcc7942_0965 0.50 +0.4 972,872 - amt1 Synpcc7942_0965 0.50 -2.5 972,894 - amt1 Synpcc7942_0965 0.53 -0.9 972,899 + -2.2 972,924 + amt1 Synpcc7942_0965 0.56 -1.3 972,956 - amt1 Synpcc7942_0965 0.59 +0.1 972,958 + amt1 Synpcc7942_0965 0.59 -1.7 972,959 + amt1 Synpcc7942_0965 0.59 -0.5 972,961 + amt1 Synpcc7942_0965 0.60 -2.2 972,980 + amt1 Synpcc7942_0965 0.61 -0.2 972,988 - amt1 Synpcc7942_0965 0.62 -0.5 973,004 + amt1 Synpcc7942_0965 0.64 -2.5 973,006 - amt1 Synpcc7942_0965 0.64 -0.5 973,050 + amt1 Synpcc7942_0965 0.69 -2.2 973,068 - amt1 Synpcc7942_0965 0.71 -2.0 973,084 + amt1 Synpcc7942_0965 0.72 +0.5 973,115 - amt1 Synpcc7942_0965 0.75 -0.9 973,115 - amt1 Synpcc7942_0965 0.75 -1.7 973,118 - amt1 Synpcc7942_0965 0.76 +0.4 973,120 - amt1 Synpcc7942_0965 0.76 -0.7 973,120 - amt1 Synpcc7942_0965 0.76 -0.3 973,153 + amt1 Synpcc7942_0965 0.79 -1.5 973,161 - amt1 Synpcc7942_0965 0.80 -3.3 973,232 + amt1 Synpcc7942_0965 0.88 -0.7 973,240 - amt1 Synpcc7942_0965 0.88 -2.5 973,306 - +1.3 973,312 + +1.9 973,320 + +0.4 973,324 + +1.7 973,345 + -0.7 973,352 - +2.2 973,352 - +0.6 973,357 + +2.8 973,357 + -1.0 973,357 + -0.7 973,357 + +0.9 973,357 + +0.0 973,357 + -0.9 973,362 + +1.5 973,365 - +1.5 973,380 - -1.5 973,382 + -0.2 973,385 - +0.5 973,388 - +0.1 973,401 - +0.4 973,401 - -1.9 973,406 - +0.5 973,493 + Synpcc7942_0966 0.23 -0.5 973,524 - Synpcc7942_0966 0.28 -0.9 973,524 - Synpcc7942_0966 0.28 -1.5 973,551 - Synpcc7942_0966 0.33 -0.9 973,573 + Synpcc7942_0966 0.36 +0.5 973,575 - Synpcc7942_0966 0.37 -0.2 973,592 + Synpcc7942_0966 0.40 -0.5 973,592 + Synpcc7942_0966 0.40 +0.6 973,592 + Synpcc7942_0966 0.40 +0.9 973,592 + Synpcc7942_0966 0.40 -2.7 973,592 + Synpcc7942_0966 0.40 +0.1 973,592 + Synpcc7942_0966 0.40 -0.9 973,594 + Synpcc7942_0966 0.40 -0.1 973,600 - Synpcc7942_0966 0.41 +2.5 973,600 - Synpcc7942_0966 0.41 +1.7 973,602 + Synpcc7942_0966 0.41 +0.9 973,602 - Synpcc7942_0966 0.41 +3.4 973,607 + Synpcc7942_0966 0.42 -0.8 973,610 - Synpcc7942_0966 0.43 +1.7 973,612 + Synpcc7942_0966 0.43 +2.1 973,620 - Synpcc7942_0966 0.44 -1.2 973,630 - Synpcc7942_0966 0.46 -0.9 973,646 - Synpcc7942_0966 0.49 +1.7 973,653 + Synpcc7942_0966 0.50 -0.7 973,661 - Synpcc7942_0966 0.51 -2.2 973,695 + Synpcc7942_0966 0.57 -0.5 973,704 - Synpcc7942_0966 0.59 -1.5 973,706 + Synpcc7942_0966 0.59 +0.7 973,706 + Synpcc7942_0966 0.59 -0.2 973,714 - Synpcc7942_0966 0.60 +0.5 973,714 - Synpcc7942_0966 0.60 +0.1 973,714 - Synpcc7942_0966 0.60 -1.3 973,714 - Synpcc7942_0966 0.60 -1.5 973,716 + Synpcc7942_0966 0.61 +0.4 973,716 - Synpcc7942_0966 0.61 -1.5 973,716 - Synpcc7942_0966 0.61 +1.9 973,716 - Synpcc7942_0966 0.61 -0.9 973,720 + Synpcc7942_0966 0.61 -2.8 973,724 - Synpcc7942_0966 0.62 +2.5 973,728 - Synpcc7942_0966 0.63 -0.3 973,811 + Synpcc7942_0966 0.77 -0.9 973,817 - Synpcc7942_0966 0.78 +0.1 973,824 - Synpcc7942_0966 0.79 +1.3 973,824 - Synpcc7942_0966 0.79 -0.0 973,908 - +0.8 973,932 - -0.4 973,932 - -1.1 973,932 - -1.3 973,932 - +0.1 973,959 + -1.6 973,959 + -2.5 973,959 + +2.0 973,959 + -1.5 973,964 + +0.6 973,964 + +0.3 973,967 - -0.6 973,967 - +0.4 973,967 - -0.9 973,971 + -0.6 973,971 + +0.6 973,972 + -0.1 973,972 - +1.5 973,979 - -1.2 973,987 + +1.5 973,996 - -0.1 973,996 - +0.5 974,000 - +1.4 974,000 - -0.3 974,097 - -2.0
Or see this region's nucleotide sequence