Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0809 and Synpcc7942_0810 are separated by 37 nucleotides Synpcc7942_0810 and nha1 are separated by 99 nucleotides
Synpcc7942_0809: Synpcc7942_0809 - hypothetical protein, at 803,073 to 804,815
_0809
Synpcc7942_0810: Synpcc7942_0810 - hypothetical protein, at 804,853 to 805,086
_0810
Synpcc7942_0811: nha1 - Na+/H+ antiporter, at 805,186 to 806,769
nha1
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.863 kb on - strand, within Synpcc7942_0809 at 803.880 kb on - strand, within Synpcc7942_0809 at 804.001 kb on + strand, within Synpcc7942_0809 at 804.018 kb on + strand, within Synpcc7942_0809 at 804.053 kb on + strand, within Synpcc7942_0809 at 804.072 kb on + strand, within Synpcc7942_0809 at 804.126 kb on + strand, within Synpcc7942_0809 at 804.127 kb on + strand, within Synpcc7942_0809 at 804.127 kb on + strand, within Synpcc7942_0809 at 804.135 kb on - strand, within Synpcc7942_0809 at 804.135 kb on - strand, within Synpcc7942_0809 at 804.194 kb on + strand, within Synpcc7942_0809 at 804.202 kb on - strand, within Synpcc7942_0809 at 804.221 kb on + strand, within Synpcc7942_0809 at 804.238 kb on + strand, within Synpcc7942_0809 at 804.255 kb on + strand, within Synpcc7942_0809 at 804.256 kb on - strand, within Synpcc7942_0809 at 804.291 kb on + strand, within Synpcc7942_0809 at 804.291 kb on + strand, within Synpcc7942_0809 at 804.299 kb on - strand, within Synpcc7942_0809 at 804.299 kb on - strand, within Synpcc7942_0809 at 804.309 kb on - strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.321 kb on - strand, within Synpcc7942_0809 at 804.321 kb on - strand, within Synpcc7942_0809 at 804.326 kb on - strand, within Synpcc7942_0809 at 804.354 kb on - strand, within Synpcc7942_0809 at 804.354 kb on - strand, within Synpcc7942_0809 at 804.358 kb on + strand, within Synpcc7942_0809 at 804.381 kb on - strand, within Synpcc7942_0809 at 804.383 kb on + strand, within Synpcc7942_0809 at 804.391 kb on - strand, within Synpcc7942_0809 at 804.391 kb on - strand, within Synpcc7942_0809 at 804.412 kb on - strand, within Synpcc7942_0809 at 804.423 kb on - strand, within Synpcc7942_0809 at 804.446 kb on + strand, within Synpcc7942_0809 at 804.471 kb on - strand, within Synpcc7942_0809 at 804.491 kb on - strand, within Synpcc7942_0809 at 804.498 kb on + strand, within Synpcc7942_0809 at 804.506 kb on - strand, within Synpcc7942_0809 at 804.506 kb on - strand, within Synpcc7942_0809 at 804.507 kb on + strand, within Synpcc7942_0809 at 804.559 kb on - strand, within Synpcc7942_0809 at 804.570 kb on - strand, within Synpcc7942_0809 at 804.572 kb on - strand, within Synpcc7942_0809 at 804.574 kb on + strand, within Synpcc7942_0809 at 804.574 kb on + strand, within Synpcc7942_0809 at 804.582 kb on - strand, within Synpcc7942_0809 at 804.585 kb on + strand, within Synpcc7942_0809 at 804.595 kb on + strand, within Synpcc7942_0809 at 804.595 kb on - strand, within Synpcc7942_0809 at 804.614 kb on - strand, within Synpcc7942_0809 at 804.668 kb on - strand at 804.669 kb on - strand at 804.674 kb on - strand at 804.674 kb on - strand at 804.674 kb on - strand at 804.699 kb on - strand at 804.709 kb on - strand at 804.711 kb on + strand at 804.716 kb on + strand at 804.724 kb on - strand at 804.736 kb on - strand at 804.743 kb on + strand at 804.788 kb on + strand at 804.794 kb on - strand at 804.796 kb on - strand at 804.809 kb on + strand at 804.809 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.811 kb on + strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.825 kb on + strand at 804.917 kb on + strand, within Synpcc7942_0810 at 804.918 kb on - strand, within Synpcc7942_0810 at 804.943 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.990 kb on + strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 805.011 kb on + strand, within Synpcc7942_0810 at 805.012 kb on + strand, within Synpcc7942_0810 at 805.012 kb on + strand, within Synpcc7942_0810 at 805.031 kb on + strand, within Synpcc7942_0810 at 805.039 kb on - strand, within Synpcc7942_0810 at 805.077 kb on + strand at 805.171 kb on + strand at 805.177 kb on - strand at 805.183 kb on + strand at 805.183 kb on + strand at 805.190 kb on + strand at 805.190 kb on + strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.198 kb on - strand at 805.214 kb on - strand at 805.216 kb on + strand at 805.257 kb on - strand at 805.262 kb on + strand at 805.319 kb on + strand at 805.340 kb on + strand at 805.598 kb on + strand, within nha1 at 805.618 kb on + strand, within nha1 at 805.639 kb on - strand, within nha1 at 805.639 kb on - strand, within nha1 at 805.664 kb on - strand, within nha1 at 805.666 kb on - strand, within nha1 at 805.699 kb on + strand, within nha1 at 805.754 kb on - strand, within nha1 at 805.794 kb on + strand, within nha1 at 805.820 kb on + strand, within nha1 at 805.828 kb on - strand, within nha1 at 805.847 kb on + strand, within nha1 at 805.848 kb on + strand, within nha1 at 805.853 kb on + strand, within nha1 at 805.853 kb on + strand, within nha1 at 805.875 kb on - strand, within nha1 at 805.891 kb on + strand, within nha1 at 805.898 kb on + strand, within nha1 at 805.901 kb on + strand, within nha1 at 805.936 kb on - strand, within nha1 at 806.006 kb on + strand, within nha1 at 806.015 kb on + strand, within nha1 at 806.025 kb on + strand, within nha1 at 806.078 kb on + strand, within nha1 at 806.086 kb on - strand, within nha1
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 803,858 - Synpcc7942_0809 0.45 -2.1 803,858 - Synpcc7942_0809 0.45 +0.1 803,863 - Synpcc7942_0809 0.45 -1.2 803,880 - Synpcc7942_0809 0.46 +0.1 804,001 + Synpcc7942_0809 0.53 +0.4 804,018 + Synpcc7942_0809 0.54 -2.7 804,053 + Synpcc7942_0809 0.56 +0.1 804,072 + Synpcc7942_0809 0.57 -0.8 804,126 + Synpcc7942_0809 0.60 -0.9 804,127 + Synpcc7942_0809 0.60 -0.5 804,127 + Synpcc7942_0809 0.60 -1.7 804,135 - Synpcc7942_0809 0.61 -1.5 804,135 - Synpcc7942_0809 0.61 -2.7 804,194 + Synpcc7942_0809 0.64 -2.3 804,202 - Synpcc7942_0809 0.65 -2.2 804,221 + Synpcc7942_0809 0.66 -2.0 804,238 + Synpcc7942_0809 0.67 -2.7 804,255 + Synpcc7942_0809 0.68 -2.2 804,256 - Synpcc7942_0809 0.68 -1.5 804,291 + Synpcc7942_0809 0.70 -2.2 804,291 + Synpcc7942_0809 0.70 -1.9 804,299 - Synpcc7942_0809 0.70 +0.4 804,299 - Synpcc7942_0809 0.70 -1.5 804,309 - Synpcc7942_0809 0.71 -3.1 804,313 + Synpcc7942_0809 0.71 -2.2 804,313 + Synpcc7942_0809 0.71 -2.6 804,313 + Synpcc7942_0809 0.71 -3.5 804,313 + Synpcc7942_0809 0.71 -4.5 804,321 - Synpcc7942_0809 0.72 -2.1 804,321 - Synpcc7942_0809 0.72 -3.8 804,326 - Synpcc7942_0809 0.72 -3.4 804,354 - Synpcc7942_0809 0.73 -0.2 804,354 - Synpcc7942_0809 0.73 -2.5 804,358 + Synpcc7942_0809 0.74 -1.5 804,381 - Synpcc7942_0809 0.75 -1.3 804,383 + Synpcc7942_0809 0.75 -0.3 804,391 - Synpcc7942_0809 0.76 -0.9 804,391 - Synpcc7942_0809 0.76 +0.1 804,412 - Synpcc7942_0809 0.77 -2.9 804,423 - Synpcc7942_0809 0.77 -1.3 804,446 + Synpcc7942_0809 0.79 -1.9 804,471 - Synpcc7942_0809 0.80 +0.1 804,491 - Synpcc7942_0809 0.81 -2.7 804,498 + Synpcc7942_0809 0.82 -0.3 804,506 - Synpcc7942_0809 0.82 -0.9 804,506 - Synpcc7942_0809 0.82 -1.5 804,507 + Synpcc7942_0809 0.82 -3.2 804,559 - Synpcc7942_0809 0.85 -0.9 804,570 - Synpcc7942_0809 0.86 -0.6 804,572 - Synpcc7942_0809 0.86 -0.5 804,574 + Synpcc7942_0809 0.86 +0.1 804,574 + Synpcc7942_0809 0.86 -2.5 804,582 - Synpcc7942_0809 0.87 -1.9 804,585 + Synpcc7942_0809 0.87 -1.5 804,595 + Synpcc7942_0809 0.87 -1.2 804,595 - Synpcc7942_0809 0.87 +0.3 804,614 - Synpcc7942_0809 0.88 +0.1 804,668 - +1.7 804,669 - -0.9 804,674 - -2.6 804,674 - -1.5 804,674 - -0.5 804,699 - -2.9 804,709 - -3.2 804,711 + +0.1 804,716 + -2.5 804,724 - -1.9 804,736 - -1.1 804,743 + +1.9 804,788 + +3.4 804,794 - +2.4 804,796 - -0.6 804,809 + -2.5 804,809 + +0.2 804,810 + +0.1 804,810 + +0.7 804,810 + +0.1 804,810 + -2.2 804,810 + +0.3 804,810 + -0.2 804,810 + +1.9 804,810 + +0.8 804,811 + -0.2 804,818 - +1.5 804,818 - +0.5 804,818 - +0.1 804,818 - +0.5 804,818 - +1.4 804,819 - +0.4 804,819 - +0.5 804,819 - +0.1 804,819 - -1.1 804,825 + +0.8 804,917 + Synpcc7942_0810 0.27 -0.5 804,918 - Synpcc7942_0810 0.28 +0.1 804,943 + Synpcc7942_0810 0.38 +1.2 804,987 + Synpcc7942_0810 0.57 -0.3 804,987 + Synpcc7942_0810 0.57 -1.7 804,987 + Synpcc7942_0810 0.57 +0.4 804,987 + Synpcc7942_0810 0.57 -0.9 804,990 + Synpcc7942_0810 0.59 +1.8 804,995 - Synpcc7942_0810 0.61 +1.7 804,995 - Synpcc7942_0810 0.61 +0.8 804,995 - Synpcc7942_0810 0.61 -1.9 804,995 - Synpcc7942_0810 0.61 -0.3 804,995 - Synpcc7942_0810 0.61 +1.9 804,995 - Synpcc7942_0810 0.61 +0.9 805,011 + Synpcc7942_0810 0.68 +1.2 805,012 + Synpcc7942_0810 0.68 +0.6 805,012 + Synpcc7942_0810 0.68 -3.4 805,031 + Synpcc7942_0810 0.76 +0.9 805,039 - Synpcc7942_0810 0.79 -0.2 805,077 + +0.1 805,171 + +0.1 805,177 - +1.0 805,183 + +2.9 805,183 + +1.1 805,190 + +1.5 805,190 + -2.5 805,191 - +0.7 805,191 - +0.7 805,191 - +0.2 805,191 - -0.6 805,198 - -1.5 805,214 - +1.8 805,216 + +0.1 805,257 - +2.1 805,262 + +0.6 805,319 + +0.4 805,340 + -0.7 805,598 + nha1 Synpcc7942_0811 0.26 -0.1 805,618 + nha1 Synpcc7942_0811 0.27 +1.2 805,639 - nha1 Synpcc7942_0811 0.29 +0.7 805,639 - nha1 Synpcc7942_0811 0.29 -2.2 805,664 - nha1 Synpcc7942_0811 0.30 +0.1 805,666 - nha1 Synpcc7942_0811 0.30 +2.6 805,699 + nha1 Synpcc7942_0811 0.32 -0.3 805,754 - nha1 Synpcc7942_0811 0.36 +1.0 805,794 + nha1 Synpcc7942_0811 0.38 +1.7 805,820 + nha1 Synpcc7942_0811 0.40 -0.9 805,828 - nha1 Synpcc7942_0811 0.41 -0.9 805,847 + nha1 Synpcc7942_0811 0.42 +1.6 805,848 + nha1 Synpcc7942_0811 0.42 +0.1 805,853 + nha1 Synpcc7942_0811 0.42 +1.1 805,853 + nha1 Synpcc7942_0811 0.42 +1.7 805,875 - nha1 Synpcc7942_0811 0.43 +1.2 805,891 + nha1 Synpcc7942_0811 0.45 +2.4 805,898 + nha1 Synpcc7942_0811 0.45 -0.6 805,901 + nha1 Synpcc7942_0811 0.45 +1.5 805,936 - nha1 Synpcc7942_0811 0.47 -2.4 806,006 + nha1 Synpcc7942_0811 0.52 -1.9 806,015 + nha1 Synpcc7942_0811 0.52 -2.5 806,025 + nha1 Synpcc7942_0811 0.53 -1.1 806,078 + nha1 Synpcc7942_0811 0.56 +1.2 806,086 - nha1 Synpcc7942_0811 0.57 +0.1
Or see this region's nucleotide sequence