Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glgC and rpe are separated by 138 nucleotides rpe and Synpcc7942_0605 are separated by 77 nucleotides
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Synpcc7942_0604: rpe - ribulose-phosphate 3-epimerase, at 592,890 to 593,633
rpe
Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694
_0605
Position (kb) 592
593
594 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 592.010 kb on - strand, within glgC at 592.383 kb on - strand, within glgC at 592.570 kb on + strand, within glgC at 592.769 kb on - strand at 592.769 kb on - strand at 592.807 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.845 kb on - strand at 592.850 kb on - strand at 592.852 kb on + strand at 592.861 kb on - strand at 592.863 kb on + strand at 592.871 kb on - strand at 592.873 kb on + strand at 592.873 kb on + strand at 592.880 kb on + strand at 592.887 kb on - strand at 592.888 kb on - strand at 592.896 kb on - strand at 592.908 kb on - strand at 592.947 kb on - strand at 592.947 kb on - strand at 593.636 kb on - strand at 593.636 kb on - strand at 593.646 kb on + strand at 593.654 kb on - strand at 593.661 kb on - strand at 593.701 kb on + strand at 593.703 kb on - strand at 593.834 kb on - strand, within Synpcc7942_0605 at 593.840 kb on + strand, within Synpcc7942_0605 at 593.840 kb on + strand, within Synpcc7942_0605 at 593.872 kb on + strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.933 kb on - strand, within Synpcc7942_0605 at 593.942 kb on + strand, within Synpcc7942_0605 at 593.958 kb on + strand, within Synpcc7942_0605 at 593.966 kb on - strand, within Synpcc7942_0605 at 594.023 kb on - strand, within Synpcc7942_0605 at 594.087 kb on - strand, within Synpcc7942_0605 at 594.088 kb on + strand, within Synpcc7942_0605 at 594.088 kb on + strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.118 kb on - strand, within Synpcc7942_0605 at 594.123 kb on - strand, within Synpcc7942_0605 at 594.137 kb on + strand, within Synpcc7942_0605 at 594.137 kb on - strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.155 kb on + strand, within Synpcc7942_0605 at 594.169 kb on + strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.209 kb on + strand, within Synpcc7942_0605 at 594.246 kb on + strand, within Synpcc7942_0605 at 594.268 kb on - strand, within Synpcc7942_0605 at 594.286 kb on + strand, within Synpcc7942_0605 at 594.309 kb on + strand, within Synpcc7942_0605 at 594.319 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.347 kb on + strand, within Synpcc7942_0605 at 594.387 kb on + strand, within Synpcc7942_0605 at 594.418 kb on + strand, within Synpcc7942_0605 at 594.432 kb on + strand, within Synpcc7942_0605 at 594.440 kb on - strand, within Synpcc7942_0605 at 594.448 kb on - strand, within Synpcc7942_0605 at 594.527 kb on - strand, within Synpcc7942_0605 at 594.529 kb on + strand, within Synpcc7942_0605 at 594.532 kb on - strand, within Synpcc7942_0605 at 594.546 kb on - strand, within Synpcc7942_0605 at 594.553 kb on + strand, within Synpcc7942_0605 at 594.572 kb on - strand, within Synpcc7942_0605 at 594.593 kb on + strand, within Synpcc7942_0605 at 594.601 kb on - strand at 594.603 kb on + strand at 594.625 kb on + strand at 594.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 592,010 - glgC Synpcc7942_0603 0.43 -2.8 592,383 - glgC Synpcc7942_0603 0.71 -3.0 592,570 + glgC Synpcc7942_0603 0.86 -2.2 592,769 - -0.5 592,769 - -1.4 592,807 + -2.7 592,837 + -2.7 592,837 + -0.1 592,837 + +0.2 592,845 - +1.2 592,850 - +3.3 592,852 + +0.8 592,861 - -2.2 592,863 + -1.0 592,871 - -0.6 592,873 + -0.8 592,873 + -1.4 592,880 + -1.3 592,887 - +0.5 592,888 - -0.0 592,896 - +0.7 592,908 - -0.2 592,947 - -0.0 592,947 - -1.4 593,636 - +1.2 593,636 - -3.2 593,646 + -0.3 593,654 - +1.0 593,661 - +1.0 593,701 + -1.4 593,703 - -1.2 593,834 - Synpcc7942_0605 0.12 +1.1 593,840 + Synpcc7942_0605 0.13 +1.0 593,840 + Synpcc7942_0605 0.13 -2.4 593,872 + Synpcc7942_0605 0.16 +0.4 593,880 - Synpcc7942_0605 0.17 +0.2 593,880 - Synpcc7942_0605 0.17 -0.3 593,880 - Synpcc7942_0605 0.17 +1.5 593,933 - Synpcc7942_0605 0.23 -0.1 593,942 + Synpcc7942_0605 0.23 +1.0 593,958 + Synpcc7942_0605 0.25 +1.2 593,966 - Synpcc7942_0605 0.26 +0.1 594,023 - Synpcc7942_0605 0.32 +0.5 594,087 - Synpcc7942_0605 0.38 -0.1 594,088 + Synpcc7942_0605 0.38 -0.6 594,088 + Synpcc7942_0605 0.38 +0.7 594,096 - Synpcc7942_0605 0.39 +0.1 594,096 - +1.5 594,096 - Synpcc7942_0605 0.39 -2.2 594,096 - Synpcc7942_0605 0.39 -1.2 594,096 - Synpcc7942_0605 0.39 -0.5 594,096 - Synpcc7942_0605 0.39 -0.9 594,118 - Synpcc7942_0605 0.41 +1.3 594,123 - Synpcc7942_0605 0.42 +0.7 594,137 + Synpcc7942_0605 0.43 +0.1 594,137 - Synpcc7942_0605 0.43 +2.6 594,145 + Synpcc7942_0605 0.44 -1.0 594,145 + Synpcc7942_0605 0.44 +0.1 594,145 + Synpcc7942_0605 0.44 -0.9 594,153 - Synpcc7942_0605 0.45 +0.7 594,153 - Synpcc7942_0605 0.45 -0.1 594,153 - Synpcc7942_0605 0.45 +0.3 594,153 - Synpcc7942_0605 0.45 +2.0 594,155 + Synpcc7942_0605 0.45 -3.9 594,169 + Synpcc7942_0605 0.47 -0.0 594,177 - Synpcc7942_0605 0.47 +0.8 594,177 - Synpcc7942_0605 0.47 -0.7 594,177 - Synpcc7942_0605 0.47 -0.4 594,177 - Synpcc7942_0605 0.47 -0.9 594,209 + Synpcc7942_0605 0.51 -2.7 594,246 + Synpcc7942_0605 0.54 +0.5 594,268 - Synpcc7942_0605 0.57 -1.4 594,286 + Synpcc7942_0605 0.58 -1.9 594,309 + Synpcc7942_0605 0.61 +0.0 594,319 + Synpcc7942_0605 0.62 -1.1 594,322 + Synpcc7942_0605 0.62 +0.0 594,322 + Synpcc7942_0605 0.62 -0.2 594,322 + Synpcc7942_0605 0.62 -0.2 594,322 + Synpcc7942_0605 0.62 +1.2 594,330 - Synpcc7942_0605 0.63 -2.7 594,330 - Synpcc7942_0605 0.63 +0.1 594,330 - Synpcc7942_0605 0.63 -2.4 594,330 - Synpcc7942_0605 0.63 -0.4 594,330 - Synpcc7942_0605 0.63 +1.0 594,330 - Synpcc7942_0605 0.63 -1.9 594,330 - Synpcc7942_0605 0.63 +0.8 594,330 - Synpcc7942_0605 0.63 -1.0 594,347 + Synpcc7942_0605 0.65 -0.4 594,387 + Synpcc7942_0605 0.69 +0.4 594,418 + Synpcc7942_0605 0.72 +0.1 594,432 + Synpcc7942_0605 0.73 +0.7 594,440 - Synpcc7942_0605 0.74 -1.9 594,448 - Synpcc7942_0605 0.75 +0.3 594,527 - Synpcc7942_0605 0.83 +1.1 594,529 + Synpcc7942_0605 0.83 +0.7 594,532 - Synpcc7942_0605 0.83 +0.7 594,546 - Synpcc7942_0605 0.85 +1.1 594,553 + Synpcc7942_0605 0.86 +1.6 594,572 - Synpcc7942_0605 0.88 +0.2 594,593 + Synpcc7942_0605 0.90 +0.1 594,601 - +0.8 594,603 + +0.1 594,625 + +1.1 594,625 + +0.6
Or see this region's nucleotide sequence