Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sqdX and ftsI overlap by 46 nucleotides ftsI and Synpcc7942_0581 are separated by 96 nucleotides Synpcc7942_0581 and Synpcc7942_0582 are separated by 38 nucleotides
Synpcc7942_0579: sqdX - sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein, at 559,632 to 560,765
sqdX
Synpcc7942_0580: ftsI - Peptidoglycan glycosyltransferase, at 560,720 to 562,537
ftsI
Synpcc7942_0581: Synpcc7942_0581 - hypothetical protein, at 562,634 to 562,981
_0581
Synpcc7942_0582: Synpcc7942_0582 - hypothetical protein, at 563,020 to 564,024
_0582
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 559.720 kb on + strand at 559.822 kb on - strand, within sqdX at 559.882 kb on - strand, within sqdX at 559.911 kb on + strand, within sqdX at 559.943 kb on + strand, within sqdX at 560.000 kb on + strand, within sqdX at 560.077 kb on + strand, within sqdX at 560.129 kb on + strand, within sqdX at 560.260 kb on - strand, within sqdX at 560.309 kb on + strand, within sqdX at 560.329 kb on + strand, within sqdX at 560.358 kb on - strand, within sqdX at 560.429 kb on - strand, within sqdX at 560.615 kb on + strand, within sqdX at 560.709 kb on + strand at 560.709 kb on + strand at 560.723 kb on - strand at 560.745 kb on + strand at 562.535 kb on - strand at 562.541 kb on - strand at 562.554 kb on + strand at 562.554 kb on + strand at 562.562 kb on - strand at 562.562 kb on - strand at 562.569 kb on - strand at 562.604 kb on + strand at 562.612 kb on - strand at 562.626 kb on + strand at 562.665 kb on - strand at 562.687 kb on - strand, within Synpcc7942_0581 at 562.687 kb on - strand, within Synpcc7942_0581 at 562.703 kb on - strand, within Synpcc7942_0581 at 562.711 kb on + strand, within Synpcc7942_0581 at 562.717 kb on + strand, within Synpcc7942_0581 at 562.719 kb on - strand, within Synpcc7942_0581 at 562.725 kb on - strand, within Synpcc7942_0581 at 562.725 kb on - strand, within Synpcc7942_0581 at 562.733 kb on + strand, within Synpcc7942_0581 at 562.733 kb on + strand, within Synpcc7942_0581 at 562.772 kb on + strand, within Synpcc7942_0581 at 562.772 kb on + strand, within Synpcc7942_0581 at 562.818 kb on + strand at 562.826 kb on - strand, within Synpcc7942_0581 at 562.826 kb on - strand, within Synpcc7942_0581 at 562.826 kb on - strand, within Synpcc7942_0581 at 562.833 kb on - strand, within Synpcc7942_0581 at 562.843 kb on + strand, within Synpcc7942_0581 at 562.843 kb on + strand, within Synpcc7942_0581 at 562.843 kb on + strand, within Synpcc7942_0581 at 562.848 kb on + strand, within Synpcc7942_0581 at 562.851 kb on - strand, within Synpcc7942_0581 at 562.851 kb on - strand, within Synpcc7942_0581 at 562.856 kb on - strand, within Synpcc7942_0581 at 562.869 kb on + strand, within Synpcc7942_0581 at 562.904 kb on + strand at 562.904 kb on + strand, within Synpcc7942_0581 at 562.910 kb on - strand, within Synpcc7942_0581 at 562.968 kb on + strand at 562.984 kb on - strand at 563.002 kb on + strand at 563.018 kb on + strand at 563.021 kb on - strand at 563.023 kb on + strand at 563.031 kb on - strand at 563.036 kb on + strand at 563.076 kb on - strand at 563.097 kb on + strand at 563.137 kb on + strand, within Synpcc7942_0582 at 563.137 kb on + strand, within Synpcc7942_0582 at 563.155 kb on - strand, within Synpcc7942_0582 at 563.180 kb on - strand, within Synpcc7942_0582 at 563.180 kb on - strand, within Synpcc7942_0582 at 563.224 kb on - strand, within Synpcc7942_0582 at 563.226 kb on + strand, within Synpcc7942_0582 at 563.226 kb on + strand, within Synpcc7942_0582 at 563.226 kb on + strand, within Synpcc7942_0582 at 563.231 kb on + strand, within Synpcc7942_0582 at 563.234 kb on - strand, within Synpcc7942_0582 at 563.234 kb on - strand, within Synpcc7942_0582 at 563.249 kb on + strand, within Synpcc7942_0582 at 563.275 kb on + strand, within Synpcc7942_0582 at 563.296 kb on - strand, within Synpcc7942_0582 at 563.301 kb on - strand, within Synpcc7942_0582 at 563.315 kb on + strand, within Synpcc7942_0582 at 563.323 kb on - strand, within Synpcc7942_0582 at 563.332 kb on + strand, within Synpcc7942_0582 at 563.342 kb on + strand, within Synpcc7942_0582 at 563.342 kb on - strand, within Synpcc7942_0582 at 563.350 kb on - strand, within Synpcc7942_0582 at 563.374 kb on - strand, within Synpcc7942_0582 at 563.375 kb on - strand, within Synpcc7942_0582 at 563.408 kb on + strand, within Synpcc7942_0582 at 563.436 kb on + strand, within Synpcc7942_0582 at 563.454 kb on + strand, within Synpcc7942_0582 at 563.462 kb on - strand, within Synpcc7942_0582 at 563.462 kb on - strand, within Synpcc7942_0582 at 563.467 kb on - strand at 563.506 kb on + strand, within Synpcc7942_0582
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 559,720 + -1.8 559,822 - sqdX Synpcc7942_0579 0.17 -3.1 559,882 - sqdX Synpcc7942_0579 0.22 -1.4 559,911 + sqdX Synpcc7942_0579 0.25 -2.6 559,943 + sqdX Synpcc7942_0579 0.27 -2.1 560,000 + sqdX Synpcc7942_0579 0.32 -1.2 560,077 + sqdX Synpcc7942_0579 0.39 -0.2 560,129 + sqdX Synpcc7942_0579 0.44 -1.4 560,260 - sqdX Synpcc7942_0579 0.55 -3.3 560,309 + sqdX Synpcc7942_0579 0.60 +1.0 560,329 + sqdX Synpcc7942_0579 0.61 -3.8 560,358 - sqdX Synpcc7942_0579 0.64 -1.4 560,429 - sqdX Synpcc7942_0579 0.70 -3.1 560,615 + sqdX Synpcc7942_0579 0.87 +2.2 560,709 + -2.8 560,709 + -3.6 560,723 - +0.7 560,745 + -2.1 562,535 - +0.8 562,541 - +1.0 562,554 + +0.5 562,554 + +1.0 562,562 - +0.9 562,562 - +0.2 562,569 - +2.2 562,604 + +0.7 562,612 - +0.4 562,626 + +0.2 562,665 - +0.9 562,687 - Synpcc7942_0581 0.15 +0.2 562,687 - Synpcc7942_0581 0.15 +1.8 562,703 - Synpcc7942_0581 0.20 -1.4 562,711 + Synpcc7942_0581 0.22 -0.4 562,717 + Synpcc7942_0581 0.24 +1.1 562,719 - Synpcc7942_0581 0.24 +1.0 562,725 - Synpcc7942_0581 0.26 -2.1 562,725 - Synpcc7942_0581 0.26 -0.1 562,733 + Synpcc7942_0581 0.28 +0.2 562,733 + Synpcc7942_0581 0.28 -1.4 562,772 + Synpcc7942_0581 0.40 -0.4 562,772 + Synpcc7942_0581 0.40 +0.6 562,818 + +0.2 562,826 - Synpcc7942_0581 0.55 -0.2 562,826 - Synpcc7942_0581 0.55 +0.8 562,826 - Synpcc7942_0581 0.55 -1.9 562,833 - Synpcc7942_0581 0.57 +1.2 562,843 + Synpcc7942_0581 0.60 +0.2 562,843 + Synpcc7942_0581 0.60 -0.4 562,843 + Synpcc7942_0581 0.60 -0.8 562,848 + Synpcc7942_0581 0.61 +1.5 562,851 - Synpcc7942_0581 0.62 +2.5 562,851 - Synpcc7942_0581 0.62 -3.4 562,856 - Synpcc7942_0581 0.64 -2.6 562,869 + Synpcc7942_0581 0.68 +1.2 562,904 + +0.2 562,904 + Synpcc7942_0581 0.78 -0.8 562,910 - Synpcc7942_0581 0.79 -0.8 562,968 + -0.2 562,984 - +0.2 563,002 + -1.8 563,018 + +0.5 563,021 - -1.3 563,023 + +0.6 563,031 - -0.8 563,036 + +3.4 563,076 - +0.5 563,097 + -0.6 563,137 + Synpcc7942_0582 0.12 -0.8 563,137 + Synpcc7942_0582 0.12 +0.9 563,155 - Synpcc7942_0582 0.13 -1.6 563,180 - Synpcc7942_0582 0.16 +1.2 563,180 - Synpcc7942_0582 0.16 -1.1 563,224 - Synpcc7942_0582 0.20 -1.4 563,226 + Synpcc7942_0582 0.20 +0.2 563,226 + Synpcc7942_0582 0.20 +0.2 563,226 + Synpcc7942_0582 0.20 -2.4 563,231 + Synpcc7942_0582 0.21 +1.0 563,234 - Synpcc7942_0582 0.21 -0.2 563,234 - Synpcc7942_0582 0.21 -1.4 563,249 + Synpcc7942_0582 0.23 -0.3 563,275 + Synpcc7942_0582 0.25 +1.3 563,296 - Synpcc7942_0582 0.27 +1.2 563,301 - Synpcc7942_0582 0.28 -0.8 563,315 + Synpcc7942_0582 0.29 +0.2 563,323 - Synpcc7942_0582 0.30 +0.1 563,332 + Synpcc7942_0582 0.31 -1.8 563,342 + Synpcc7942_0582 0.32 +0.9 563,342 - Synpcc7942_0582 0.32 -0.1 563,350 - Synpcc7942_0582 0.33 -1.3 563,374 - Synpcc7942_0582 0.35 -2.4 563,375 - Synpcc7942_0582 0.35 -0.5 563,408 + Synpcc7942_0582 0.39 +0.1 563,436 + Synpcc7942_0582 0.41 -0.3 563,454 + Synpcc7942_0582 0.43 +0.2 563,462 - Synpcc7942_0582 0.44 -0.8 563,462 - Synpcc7942_0582 0.44 +2.5 563,467 - +1.2 563,506 + Synpcc7942_0582 0.48 +0.9
Or see this region's nucleotide sequence