Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0487

Experiment: Rifampicin 0.0003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpyrC and lepB overlap by 45 nucleotideslepB and Synpcc7942_0488 are separated by 143 nucleotides Synpcc7942_0486: pyrC - dihydroorotase, at 472,319 to 473,554 pyrC Synpcc7942_0487: lepB - thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A, at 473,510 to 474,172 lepB Synpcc7942_0488: Synpcc7942_0488 - dihydroorotase, at 474,316 to 475,644 _0488 Position (kb) 473 474 475Strain fitness (log2 ratio) -2 -1 0 1at 473.533 kb on + strandat 473.549 kb on + strandat 473.549 kb on + strandat 473.549 kb on + strandat 473.600 kb on - strand, within lepBat 474.176 kb on + strandat 474.222 kb on - strandat 474.277 kb on + strandat 474.283 kb on + strandat 474.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml
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473,533 + -1.1
473,549 + -0.8
473,549 + -1.2
473,549 + -2.3
473,600 - lepB Synpcc7942_0487 0.14 -0.5
474,176 + -1.8
474,222 - +1.2
474,277 + -1.3
474,283 + -0.2
474,294 - -2.6

Or see this region's nucleotide sequence